Ecology and genomics of Actinobacteria: new concepts for natural product discovery

DA van Bergeijk, BR Terlouw, MH Medema… - Nature Reviews …, 2020 - nature.com
Actinobacteria constitute a highly diverse bacterial phylum with an unrivalled metabolic
versatility. They produce most of the clinically used antibiotics and a plethora of other natural …

The confluence of big data and evolutionary genome mining for the discovery of natural products

MG Chevrette, A Gavrilidou, S Mantri… - Natural product …, 2021 - pubs.rsc.org
This review covers literature between 2003–2021 The development and application of
genome mining tools has given rise to ever-growing genetic and chemical databases and …

[HTML][HTML] Major genetic discontinuity and novel toxigenic species in Clostridioides difficile taxonomy

DR Knight, K Imwattana, B Kullin, E Guerrero-Araya… - Elife, 2021 - elifesciences.org
Clostridioides difficile infection (CDI) remains an urgent global One Health threat. The
genetic heterogeneity seen across C. difficile underscores its wide ecological versatility and …

Biogeographic patterns of biosynthetic potential and specialized metabolites in marine sediments

AB Chase, A Bogdanov, AM Demko… - The ISME …, 2023 - academic.oup.com
While the field of microbial biogeography has largely focused on the contributions of abiotic
factors to community patterns, the potential influence of biotic interactions in structuring …

Genome mining for drug discovery: progress at the front end

RH Baltz - Journal of Industrial Microbiology and Biotechnology, 2021 - academic.oup.com
Microbial genome mining for drug discovery and development has been accelerating in
recent years, driven by technical advancements in genome sequencing, bioinformatics …

Competition Sensing Changes Antibiotic Production in Streptomyces

S Westhoff, AM Kloosterman, SFA van Hoesel… - MBio, 2021 - Am Soc Microbiol
One of the most important ways that bacteria compete for resources and space is by
producing antibiotics that inhibit competitors. Because antibiotic production is costly, the …

Soil bacterial populations are shaped by recombination and gene-specific selection across a grassland meadow

A Crits-Christoph, MR Olm, S Diamond… - The ISME …, 2020 - academic.oup.com
Soil microbial diversity is often studied from the perspective of community composition, but
less is known about genetic heterogeneity within species. The relative impacts of clonal …

Needles in haystacks: reevaluating old paradigms for the discovery of bacterial secondary metabolites

MG Chevrette, J Handelsman - Natural Product Reports, 2021 - pubs.rsc.org
Covering: up to 2021 Natural products research is in the midst of a renaissance ushered in
by a modern understanding of microbiology and the technological explosions of genomics …

Actinobacteria: Prolific producers of bioactive metabolites

LH Lee, BH Goh, KG Chan - Frontiers in Microbiology, 2020 - frontiersin.org
For decades, scientists have conducted bioprospecting on Actinobacteria for the discovery
of novel genera producing bioactive metabolites (Atalan et al., 2000; Bull et al., 2000; …

Mining the Biosynthetic Potential for Specialized Metabolism of a Streptomyces Soil Community

M Nicault, AR Tidjani, A Gauthier, S Dumarcay… - Antibiotics, 2020 - mdpi.com
The diversity and distribution of specialized metabolite gene clusters within a community of
bacteria living in the same soil habitat are poorly documented. Here we analyzed the …