Next-generation physiology approaches to study microbiome function at single cell level

R Hatzenpichler, V Krukenberg, RL Spietz… - Nature Reviews …, 2020 - nature.com
The function of cells in their native habitat often cannot be reliably predicted from genomic
data or from physiology studies of isolates. Traditional experimental approaches to study the …

A review of methods to determine viability, vitality, and metabolic rates in microbiology

O Braissant, M Astasov-Frauenhoffer… - Frontiers in …, 2020 - frontiersin.org
Viability and metabolic assays are commonly used as proxies to assess the overall
metabolism of microorganisms. The variety of these assays combined with little information …

Microbial seed banks: the ecological and evolutionary implications of dormancy

JT Lennon, SE Jones - Nature reviews microbiology, 2011 - nature.com
Dormancy is a bet-hedging strategy used by a wide range of taxa, including
microorganisms. It refers to an organism's ability to enter a reversible state of low metabolic …

Tetrazolium dyes as tools in cell biology: new insights into their cellular reduction

MV Berridge, PM Herst, AS Tan - Biotechnology annual review, 2005 - Elsevier
Tetrazolium salts have become some of the most widely used tools in cell biology for
measuring the metabolic activity of cells ranging from mammalian to microbial origin. With …

Single-cell microbiology: tools, technologies, and applications

BF Brehm-Stecher, EA Johnson - Microbiology and molecular …, 2004 - Am Soc Microbiol
The field of microbiology has traditionally been concerned with and focused on studies at
the population level. Information on how cells respond to their environment, interact with …

Does the high nucleic acid content of individual bacterial cells allow us to discriminate between active cells and inactive cells in aquatic systems?

P Lebaron, P Servais, H Agogué… - Applied and …, 2001 - Am Soc Microbiol
The nucleic acid contents of individual bacterial cells as determined with three different
nucleic acid-specific fluorescent dyes (SYBR I, SYBR II, and SYTO 13) and flow cytometry …

Assessment of bacterial viability: a comprehensive review on recent advances and challenges

SS Kumar, AR Ghosh - Microbiology, 2019 - microbiologyresearch.org
Assessing bacterial contamination in environmental samples is critical in determining threats
to public health. The classical methods are time-consuming and only recognize species that …

[PDF][PDF] Simplified protocols for the preparation of genomic DNA from bacterial cultures

E Moore, A Arnscheidt, A Krüger… - Molecular microbial …, 1999 - researchgate.net
The development of methodologies for the analysis of microorganisms and microbial
ecology, at the molecular level (ie, nucleic acids, proteins, lipids, and their genes), has …

Specific and rapid enumeration of viable but nonculturable and viable-culturable gram-negative bacteria by using flow cytometry

MMT Khan, BH Pyle, AK Camper - Applied and environmental …, 2010 - Am Soc Microbiol
An issue of critical concern in microbiology is the ability to detect viable but nonculturable
(VBNC) and viable-culturable (VC) cells by methods other than existing approaches. Culture …

[HTML][HTML] Population and single cell metabolic activity of UV-induced VBNC bacteria determined by CTC-FCM and D2O-labeled Raman spectroscopy

L Guo, C Ye, L Cui, K Wan, S Chen, S Zhang… - Environment …, 2019 - Elsevier
The occurrence of viable but non-culturable (VBNC) bacteria will result in significant
underestimation of viable bacterial counts in drinking water. Whereas, much is unknown in …