Editing the microbiome the CRISPR way

G Ramachandran, D Bikard - … Transactions of the …, 2019 - royalsocietypublishing.org
Our bodies are colonized by a complex ecosystem of bacteria, unicellular eukaryotes and
their viruses that together play a major role in our health. Over the past few years tools …

The theophylline aptamer: 25 years as an important tool in cellular engineering research

A Wrist, W Sun, RM Summers - ACS Synthetic Biology, 2020 - ACS Publications
The theophylline aptamer was isolated from an oligonucleotide library in 1994. Since that
time, the aptamer has found wide utility, particularly in synthetic biology, cellular …

Reconstitution of a minimal motility system based on Spiroplasma swimming by two bacterial actins in a synthetic minimal bacterium

H Kiyama, S Kakizawa, Y Sasajima, YO Tahara… - Science …, 2022 - science.org
Motility is one of the most important features of life, but its evolutionary origin remains
unknown. In this study, we focused on Spiroplasma, commensal, or parasitic bacteria. They …

Gene silencing with CRISPRi in bacteria and optimization of dCas9 expression levels

F Depardieu, D Bikard - Methods, 2020 - Elsevier
The catalytic null mutant of the Cas9 endonuclease from the bacterial CRISPR immune
system, known as dCas9, can be guided by a small RNA to bind DNA sequences of interest …

A Post-translational Metabolic Switch Enables Complete Decoupling of Bacterial Growth from Biopolymer Production in Engineered Escherichia coli

G Durante-Rodríguez, V De Lorenzo… - ACS synthetic …, 2018 - ACS Publications
Most of the current methods for controlling the formation rate of a key protein or enzyme in
cell factories rely on the manipulation of target genes within the pathway. In this article, we …

CRISPR-based approaches for gene regulation in non-model bacteria

SN Call, LB Andrews - Frontiers in genome editing, 2022 - frontiersin.org
CRISPR interference (CRISPRi) and CRISPR activation (CRISPRa) have become
ubiquitous approaches to control gene expression in bacteria due to their simple design and …

Status quo of tet regulation in bacteria

R Bertram, B Neumann, CF Schuster - Microbial Biotechnology, 2022 - Wiley Online Library
The tetracycline repressor (TetR) belongs to the most popular, versatile and efficient
transcriptional regulators used in bacterial genetics. In the tetracycline (Tc) resistance …

Impact of CRISPR interference on strain development in biotechnology

K Schultenkämper, LF Brito… - Biotechnology and …, 2020 - Wiley Online Library
Genetic perturbation systems are of great interest to redirect metabolic fluxes for value‐
added production, as well as genetic screening for the development of new drugs, or to …

Gene editing tools for mycoplasmas: references and future directions for efficient genome manipulation

G Zhao, D Lu, M Li, Y Wang - Frontiers in Microbiology, 2023 - frontiersin.org
Mycoplasmas are successful pathogens that cause debilitating diseases in humans and
various animal hosts. Despite the exceptionally streamlined genomes, mycoplasmas have …

Microbial CRISPRi and CRISPRa systems for metabolic engineering

Y Zheng, T Su, Q Qi - Biotechnology and Bioprocess Engineering, 2019 - Springer
Transcriptional regulation is essential for maintaining the natural cell metabolism of
microbes and therefore important for metabolic engineering. The development of non-native …