[HTML][HTML] The mannose phosphotransferase system (Man-PTS)-Mannose transporter and receptor for bacteriocins and bacteriophages

JM Jeckelmann, B Erni - Biochimica et Biophysica Acta (BBA) …, 2020 - Elsevier
Mannose transporters constitute a superfamily (Man-PTS) of the Phosphoenolpyruvate
Carbohydrate Phosphotransferase System (PTS). The membrane complexes are …

Mapping DNA sequence to transcription factor binding energy in vivo

SL Barnes, NM Belliveau, WT Ireland… - PLoS computational …, 2019 - journals.plos.org
Despite the central importance of transcriptional regulation in biology, it has proven difficult
to determine the regulatory mechanisms of individual genes, let alone entire gene networks …

Structure to function of an α-glucan metabolic pathway that promotes Listeria monocytogenes pathogenesis

SH Light, LA Cahoon, AS Halavaty, NE Freitag… - Nature …, 2016 - nature.com
Here we employ a 'systems structural biology'approach to functionally characterize an
unconventional α-glucan metabolic pathway from the food-borne pathogen Listeria …

BadR (BB0693) controls growth phase‐dependent induction of rpoS and bosR in Borrelia burgdorferi via recognizing TAAAATAT motifs

Z Ouyang, J Zhou - Molecular Microbiology, 2015 - Wiley Online Library
In B orrelia burgdorferi (B b), the alternative sigma factor RpoS plays a central role during
Bb's adaptation to ticks and mammals. Previous studies have demonstrated that RpoS is not …

iLight2: A near‐infrared optogenetic tool for gene transcription with low background activation

M Baloban, LA Kasatkina, VV Verkhusha - Protein Science, 2024 - Wiley Online Library
Optogenetic tools (OTs) operating in the far‐red and near‐infrared (NIR) region offer
advantages for light‐controlling biological processes in deep tissues and spectral …

Regulation of amino sugar utilization in Bacillus subtilis by the GntR family regulators, NagR and GamR

I Gaugué, J Oberto, J Plumbridge - Molecular microbiology, 2014 - Wiley Online Library
In B acillus subtilis separate sets of genes are implicated in the transport and metabolism of
the amino sugars, glucosamine and N‐acetylglucosamine. The genes for use of N …

Analysis of Xylose Operon from Paenibacillus polymyxa ATCC842 and Development of Tools for Gene Expression

Z Wang, Y Fang, Y Shi, Y Xin, ZH Gu, T Yang… - International Journal of …, 2022 - mdpi.com
With numerous industrial applications, Paenibacillus polymyxa has been accepted as the
candidate of the cell factory for many secondary metabolites. However, as the regulatory …

A phage-displayed single domain antibody fused to alkaline phosphatase for detection of porcine circovirus type 2

S Yang, Y Shang, S Yin, D Wang, J Cai, Z Gong… - Journal of virological …, 2015 - Elsevier
The fusion of single domain antibodies (sdAbs) and alkaline phosphatase (AP) has been
demonstrated to be useful as an immunodiagnostic reagent. In this work, a porcine …

Operator recognition by the ROK transcription factor family members, NagC and Mlc

D Bréchemier-Baey… - Nucleic Acids …, 2015 - academic.oup.com
NagC and Mlc, paralogous members of the ROK family of proteins with almost identical helix-
turn-helix DNA binding motifs, specifically regulate genes for transport and utilization of N …

Toxin YafQ Reduces Escherichia coli Growth at Low Temperatures

Y Zhao, MJ McAnulty, TK Wood - Plos one, 2016 - journals.plos.org
Toxin/antitoxin (TA) systems reduce metabolism under stress; for example, toxin YafQ of the
YafQ/DinJ Escherichia coli TA system reduces growth by cleaving transcripts with in-frame 5' …