Hypoxia-inducible factor 3 biology: complexities and emerging themes

C Duan - American Journal of Physiology-Cell Physiology, 2016 - journals.physiology.org
The hypoxia-inducible factor (HIF) family has three distinct members in most vertebrates. All
three HIFs consist of a unique and oxygen-labile α-subunit and a common and stable β …

Generating specificity and diversity in the transcriptional response to hypoxia

U Lendahl, KL Lee, H Yang, L Poellinger - Nature Reviews Genetics, 2009 - nature.com
The sensing of oxygen levels and maintenance of oxygen homeostasis is crucial for cells.
The hypoxic-sensitive regulation of gene expression allows information about the oxygen …

Single-cell analysis uncovers that metabolic reprogramming by ErbB2 signaling is essential for cardiomyocyte proliferation in the regenerating heart

H Honkoop, DEM de Bakker, A Aharonov, F Kruse… - Elife, 2019 - elifesciences.org
While the heart regenerates poorly in mammals, efficient heart regeneration occurs in
zebrafish. Studies in zebrafish have resulted in a model in which preexisting cardiomyocytes …

The oxygen-rich postnatal environment induces cardiomyocyte cell-cycle arrest through DNA damage response

BN Puente, W Kimura, SA Muralidhar, J Moon… - Cell, 2014 - cell.com
The mammalian heart has a remarkable regenerative capacity for a short period of time after
birth, after which the majority of cardiomyocytes permanently exit cell cycle. We sought to …

Fold change and p-value cutoffs significantly alter microarray interpretations

MR Dalman, A Deeter, G Nimishakavi, ZH Duan - BMC bioinformatics, 2012 - Springer
Background As context is important to gene expression, so is the preprocessing of
microarray to transcriptomics. Microarray data suffers from several normalization and …

Acute hypoxia changes the mode of glucose and lipid utilization in the liver of the largemouth bass (Micropterus salmoides)

JL Sun, LL Zhao, H Wu, Q Liu, L Liao, J Luo… - Science of the Total …, 2020 - Elsevier
Dissolved oxygen (DO) undountedly affects fish distribution, metabolism, and evern survival.
Intensive aquaculture and environmental changes will inevitably lead to hypoxic stress for …

Cross-kingdom comparison of transcriptomic adjustments to low-oxygen stress highlights conserved and plant-specific responses

A Mustroph, SC Lee, T Oosumi, ME Zanetti… - Plant …, 2010 - academic.oup.com
High-throughput technology has facilitated genome-scale analyses of transcriptomic
adjustments in response to environmental perturbations with an oxygen deprivation …

The zebrafish (Danio rerio) as a model organism, with emphasis on applications for finfish aquaculture research

L Ribas, F Piferrer - Reviews in Aquaculture, 2014 - Wiley Online Library
The zebrafish (D anio rerio) is a freshwater teleost of the family C yprinidae that is
established as a model organism in many research fields. Here, we define the …

[图书][B] The laboratory zebrafish

C Harper, C Lawrence - 2016 - books.google.com
Second only to the mouse and rat, the zebrafish is the most popular animal model in
biomedical research. Rapid embryonic development and transparent organogenesis give it …

Retinoic acid receptor antagonists inhibit miR-10a expression and block metastatic behavior of pancreatic cancer

FU Weiss, IJ Marques, JM Woltering, DH Vlecken… - Gastroenterology, 2009 - Elsevier
BACKGROUND & AIMS: The infiltrating ductal adenocarcinoma of the pancreas is among
the most lethal of all solid malignancies, largely owing to a high frequency of early …