Systems biology in cardiovascular disease: a multiomics approach

A Joshi, M Rienks, K Theofilatos, M Mayr - Nature Reviews Cardiology, 2021 - nature.com
Omics techniques generate large, multidimensional data that are amenable to analysis by
new informatics approaches alongside conventional statistical methods. Systems theories …

Molecular and evolutionary processes generating variation in gene expression

MS Hill, P Vande Zande, PJ Wittkopp - Nature Reviews Genetics, 2021 - nature.com
Heritable variation in gene expression is common within and between species. This
variation arises from mutations that alter the form or function of molecular gene regulatory …

The role of regulatory variation in complex traits and disease

FW Albert, L Kruglyak - Nature Reviews Genetics, 2015 - nature.com
We are in a phase of unprecedented progress in identifying genetic loci that cause variation
in traits ranging from growth and fitness in simple organisms to disease in humans …

Immune signaling in neurodegeneration

TR Hammond, SE Marsh, B Stevens - Immunity, 2019 - cell.com
Neurodegenerative diseases of the central nervous system progressively rob patients of
their memory, motor function, and ability to perform daily tasks. Advances in genetics and …

Using probabilistic estimation of expression residuals (PEER) to obtain increased power and interpretability of gene expression analyses

O Stegle, L Parts, M Piipari, J Winn, R Durbin - Nature protocols, 2012 - nature.com
We present PEER (probabilistic estimation of expression residuals), a software package
implementing statistical models that improve the sensitivity and interpretability of genetic …

Defining the consequences of genetic variation on a proteome-wide scale

JM Chick, SC Munger, P Simecek, EL Huttlin, K Choi… - Nature, 2016 - nature.com
Genetic variation modulates protein expression through both transcriptional and post-
transcriptional mechanisms. To characterize the consequences of natural genetic diversity …

Learning from co-expression networks: possibilities and challenges

EAR Serin, H Nijveen, HWM Hilhorst… - Frontiers in plant …, 2016 - frontiersin.org
Plants are fascinating and complex organisms. A comprehensive understanding of the
organization, function and evolution of plant genes is essential to disentangle important …

Population genomics of parallel adaptation in threespine stickleback using sequenced RAD tags

PA Hohenlohe, S Bassham, PD Etter, N Stiffler… - PLoS …, 2010 - journals.plos.org
Next-generation sequencing technology provides novel opportunities for gathering genome-
scale sequence data in natural populations, laying the empirical foundation for the evolving …

[HTML][HTML] Functional genetic variants revealed by massively parallel precise genome editing

E Sharon, SAA Chen, NM Khosla, JD Smith… - Cell, 2018 - cell.com
A major challenge in genetics is to identify genetic variants driving natural phenotypic
variation. However, current methods of genetic mapping have limited resolution. To address …

Understanding mechanisms underlying human gene expression variation with RNA sequencing

JK Pickrell, JC Marioni, AA Pai, JF Degner… - Nature, 2010 - nature.com
Understanding the genetic mechanisms underlying natural variation in gene expression is a
central goal of both medical and evolutionary genetics, and studies of expression …