Network pharmacology: towards the artificial intelligence-based precision traditional Chinese medicine

P Zhang, D Zhang, W Zhou, L Wang… - Briefings in …, 2024 - academic.oup.com
Network pharmacology (NP) provides a new methodological perspective for understanding
traditional medicine from a holistic perspective, giving rise to frontiers such as traditional …

3D molecular generative framework for interaction-guided drug design

W Zhung, H Kim, WY Kim - Nature Communications, 2024 - nature.com
Deep generative modeling has a strong potential to accelerate drug design. However,
existing generative models often face challenges in generalization due to limited data …

Tree-Invent: A Novel Multipurpose Molecular Generative Model Constrained with a Topological Tree

M Xu, H Chen - Journal of Chemical Information and Modeling, 2023 - ACS Publications
De novo molecular design plays an important role in drug discovery. Here, a novel
generative model, Tree-Invent, was proposed to integrate topological constraints in the …

Interface-aware molecular generative framework for protein-protein interaction modulators

J Wang, J Mao, C Li, H Xiang, X Wang, S Wang… - bioRxiv, 2023 - biorxiv.org
Protein-protein interactions (PPIs) play a crucial role in many biochemical processes and
biological processes. Recently, many structure-based molecular generative models have …

A Protein-Ligand Interaction-focused 3D Molecular Generative Framework for Generalizable Structure-based Drug Design

W Zhung, H Kim, WY Kim - 2023 - chemrxiv.org
Deep generative models have been the subject of immense interest in various fields of
science. While seeking a molecule that favorably binds to a target is a long-established goal …

Interaction-aware 3D Molecular Generative Framework for Generalizable Structure-based Drug Design

WY Kim, W Zhung, H Kim - 2023 - researchsquare.com
Deep generative modeling has a strong potential to accelerate drug design. However,
existing generative models often face challenges in generalization due to limited data …

Tree-Invent: A novel molecular generative model constrained with topological tree

M Xu, H Chen - 2023 - researchsquare.com
De novo molecular design plays an important role in drug discovery. Here a novel
generative model, Tree-Invent, was proposed to integrate topological constraints in the …

Learning to Explain Hypergraph Neural Networks

S Maleki, E Hajiramezanali, G Scalia, T Biancalani… - 2023 - openreview.net
Hypergraphs are expressive structures for describing higher-order relationships among
entities, with widespread applications across biology and drug discovery. Hypergraph …

Chembr: A Novel Generative Model Based on Bidirectional Molecular Ring Constraints

Q Wang, G Lv, L Gu - papers.ssrn.com
Deep generative models are emerging as crucial tools for molecular design in the early
stages of drug discovery, with the Simplified Molecular Input Line Entry System (SMILES) …