Applications of molecular dynamics simulations in drug discovery

S AlRawashdeh, KH Barakat - Computational Drug Discovery and Design, 2023 - Springer
In the current drug development process, molecular dynamics (MD) simulations have proven
to be very useful. This chapter provides an overview of the current applications of MD …

Research in the field of drug design and development

G Biala, E Kedzierska, M Kruk-Slomka… - Pharmaceuticals, 2023 - mdpi.com
The processes used by academic and industrial scientists to discover new drugs have
recently experienced a true renaissance, with many new and exciting techniques being …

Integrative ligand-based pharmacophore modeling, virtual screening, and molecular docking simulation approaches identified potential lead compounds against …

MHR Molla, MO Aljahdali, MAA Sumon, AH Asseri… - Pharmaceuticals, 2023 - mdpi.com
Pancreatic cancer is a very deadly disease with a 5-year survival rate, making it one of the
leading causes of cancer-related deaths globally. Focal adhesion kinase 1 (FAK1) is a …

[HTML][HTML] Identification of phytochemical compounds to inhibit the matrix-like linker protein VP26 to block the assembles of white spot syndrome virus (WSSV) envelope …

MHR Molla, MO Aljahdali - Journal of King Saud University-Science, 2022 - Elsevier
White spot syndrome virus (WSSV) is an enveloped pathogenic virus of cultured shrimp that
has a mortality rate of up to 100% in intensive aquaculture systems. The virulent pathogen …

Computational formulation of a multiepitope vaccine unveils an exceptional prophylactic candidate against Merkel cell polyomavirus

RR Imon, A Samad, R Alam, AA Alsaiari… - Frontiers in …, 2023 - frontiersin.org
Merkel cell carcinoma (MCC) is a rare neuroendocrine skin malignancy caused by human
Merkel cell polyomavirus (MCV), leading to the most aggressive skin cancer in humans …

Role of computer-aided drug design in drug development

R Gu, F Wu, Z Huang - Molecules, 2023 - mdpi.com
The introduction of computational techniques to pharmaceutical chemistry and molecular
biology in the 20th century has changed the way people develop drugs. The computeraided …

[HTML][HTML] Marine-derived sea urchin compounds as potential anti-cancer drug candidate against colorectal cancer: In silico and in vitro studies

MHR Molla, MO Aljahdali - Saudi Journal of Biological Sciences, 2023 - Elsevier
Sea urchin-derived compounds are potential candidates for the development of effective
drugs for the treatment of cancer diseases. In this study, 19 compounds derived from sea …

Mathematical models of cystic fibrosis as a systemic disease

DV Olivença, JD Davis, CM Kumbale… - WIREs Mechanisms …, 2023 - Wiley Online Library
Cystic fibrosis (CF) is widely known as a disease of the lung, even though it is in truth a
systemic disease, whose symptoms typically manifest in gastrointestinal dysfunction first. CF …

[HTML][HTML] Applications of genome-scale metabolic models to the study of human diseases: A systematic review

N Cortese, A Procopio, A Merola, P Zaffino… - Computer Methods and …, 2024 - Elsevier
Abstract Background and Objectives: Genome-scale metabolic networks (GEMs) represent a
valuable modeling and computational tool in the broad field of systems biology. Their ability …

In-silico molecular interactions among the secondary metabolites of Caulerpa spp. and colorectal cancer targets

N Mert-Ozupek, G Calibasi-Kocal, N Olgun… - Frontiers in …, 2022 - frontiersin.org
Caulerpa spp. secrete more than thirty different bioactive chemicals which have already
been used in cancer treatment research since they play a pivotal role in cancer metabolism …