The AAA+ superfamily: a review of the structural and mechanistic principles of these molecular machines

YA Khan, KI White, AT Brunger - Critical reviews in biochemistry …, 2022 - Taylor & Francis
ATPases associated with diverse cellular activities (AAA+ proteins) are a superfamily of
proteins found throughout all domains of life. The hallmark of this family is a conserved …

PCNA loaders and unloaders—One ring that rules them all

M Arbel, K Choudhary, O Tfilin, M Kupiec - Genes, 2021 - mdpi.com
During each cell duplication, the entirety of the genomic DNA in every cell must be
accurately and quickly copied. Given the short time available for the chore, the requirement …

Cryo-EM structures reveal high-resolution mechanism of a DNA polymerase sliding clamp loader

C Gaubitz, X Liu, J Pajak, NP Stone, JA Hayes… - Elife, 2022 - elifesciences.org
Sliding clamps are ring-shaped protein complexes that are integral to the DNA replication
machinery of all life. Sliding clamps are opened and installed onto DNA by clamp loader …

Structural mechanisms for replicating DNA in eukaryotes

I Attali, MR Botchan, JM Berger - Annual review of biochemistry, 2021 - annualreviews.org
The faithful and timely copying of DNA by molecular machines known as replisomes
depends on a disparate suite of enzymes and scaffolding factors working together in a …

DNA is loaded through the 9-1-1 DNA checkpoint clamp in the opposite direction of the PCNA clamp

F Zheng, RE Georgescu, NY Yao… - Nature structural & …, 2022 - nature.com
Abstract The 9-1-1 DNA checkpoint clamp is loaded onto 5′-recessed DNA to activate the
DNA damage checkpoint that arrests the cell cycle. The 9-1-1 clamp is a heterotrimeric ring …

Mechanisms of loading and release of the 9-1-1 checkpoint clamp

JC Castaneda, M Schrecker, D Remus… - Nature structural & …, 2022 - nature.com
Single-stranded or double-stranded DNA junctions with recessed 5′ ends serve as loading
sites for the checkpoint clamp, 9-1-1, which mediates activation of the apical checkpoint …

[HTML][HTML] Structures of 9-1-1 DNA checkpoint clamp loading at gaps from start to finish and ramification on biology

F Zheng, RE Georgescu, NY Yao, ME O'Donnell, H Li - Cell reports, 2023 - cell.com
Rad24-RFC (replication factor C) loads the 9-1-1 checkpoint clamp onto the recessed 5′
ends by binding a 5′ DNA at an external surface site and threading the 3′ single-stranded …

Structure of the PCNA unloader Elg1-RFC

F Zheng, NY Yao, RE Georgescu, H Li… - Science …, 2024 - science.org
During DNA replication, the proliferating cell nuclear antigen (PCNA) clamps are loaded
onto primed sites for each Okazaki fragment synthesis by the AAA+ heteropentamer …

Cryo-EM structures reveal that RFC recognizes both the 3′-and 5′-DNA ends to load PCNA onto gaps for DNA repair

F Zheng, R Georgescu, NY Yao, H Li, ME O'Donnell - Elife, 2022 - elifesciences.org
RFC uses ATP to assemble PCNA onto primed sites for replicative DNA polymerases δ and
ε. The RFC pentamer forms a central chamber that binds 3′ ss/ds DNA junctions to load …

Structure of the human RAD17–RFC clamp loader and 9–1–1 checkpoint clamp bound to a dsDNA–ssDNA junction

M Day, AW Oliver, LH Pearl - Nucleic Acids Research, 2022 - academic.oup.com
Abstract The RAD9–RAD1–HUS1 (9–1–1) clamp forms one half of the DNA damage
checkpoint system that signals the presence of substantial regions of single-stranded DNA …