[HTML][HTML] PDZ domains and their binding partners: structure, specificity, and modification

HJ Lee, JJ Zheng - Cell communication and Signaling, 2010 - Springer
PDZ domains are abundant protein interaction modules that often recognize short amino
acid motifs at the C-termini of target proteins. They regulate multiple biological processes …

[HTML][HTML] Mechanosensing and mechanoregulation of endothelial cell functions

Y Fang, D Wu, KG Birukov - Comprehensive physiology, 2019 - ncbi.nlm.nih.gov
Vascular endothelial cells (ECs) form a semiselective barrier for macromolecules and cell
elements regulated by dynamic interactions between cytoskeletal elements and cell …

High-resolution mapping of protein sequence-function relationships

DM Fowler, CL Araya, SJ Fleishman, EH Kellogg… - Nature …, 2010 - nature.com
We present a large-scale approach to investigate the functional consequences of sequence
variation in a protein. The approach entails the display of hundreds of thousands of protein …

Engineered protein scaffolds as next-generation therapeutics

M Gebauer, A Skerra - Annual review of pharmacology and …, 2020 - annualreviews.org
The concept of engineering robust protein scaffolds for novel binding functions emerged 20
years ago, one decade after the advent of recombinant antibody technology. Early examples …

Modification‐specific proteomics: strategies for characterization of post‐translational modifications using enrichment techniques

Y Zhao, ON Jensen - Proteomics, 2009 - Wiley Online Library
More than 300 different types of protein post‐translational modifications (PTMs) have been
described, many of which are known to have pivotal roles in cellular physiology and …

Linear motif atlas for phosphorylation-dependent signaling

ML Miller, LJ Jensen, F Diella, C Jørgensen, M Tinti… - Science …, 2008 - science.org
Systematic and quantitative analysis of protein phosphorylation is revealing dynamic
regulatory networks underlying cellular responses to environmental cues. However …

Structural basis for inhibition of the drug efflux pump NorA from Staphylococcus aureus

DN Brawley, DB Sauer, J Li, X Zheng, A Koide… - Nature chemical …, 2022 - nature.com
Membrane protein efflux pumps confer antibiotic resistance by extruding structurally distinct
compounds and lowering their intracellular concentration. Yet, there are no clinically …

Efficient selection of DARPins with sub-nanomolar affinities using SRP phage display

D Steiner, P Forrer, A Plückthun - Journal of molecular biology, 2008 - Elsevier
There is an ever-increasing demand to select specific, high-affinity binding molecules
against targets of biomedical interest. The success of such selections depends strongly on …

Monobodies and other synthetic binding proteins for expanding protein science

F Sha, G Salzman, A Gupta, S Koide - Protein Science, 2017 - Wiley Online Library
Synthetic binding proteins are constructed using nonantibody molecular scaffolds. Over the
last two decades, in‐depth structural and functional analyses of synthetic binding proteins …

Contemporary strategies for the stabilization of peptides in the α-helical conformation

LK Henchey, AL Jochim, PS Arora - Current opinion in chemical biology, 2008 - Elsevier
Herein we review contemporary synthetic and protein design strategies to stabilize the α-
helical motif in short peptides and miniature proteins. Advances in organometallic catalyst …