Recommendations for reporting ion mobility Mass Spectrometry measurements

V Gabelica, AA Shvartsburg, C Afonso… - Mass spectrometry …, 2019 - Wiley Online Library
Here we present a guide to ion mobility mass spectrometry experiments, which covers both
linear and nonlinear methods: what is measured, how the measurements are done, and how …

Biomolecule analysis by ion mobility spectrometry

BC Bohrer, SI Merenbloom, SL Koeniger… - Annu. Rev. Anal …, 2008 - annualreviews.org
Although nonnative protein conformations, including intermediates along the folding
pathway and kinetically trapped misfolded species that disfavor the native state, are rarely …

Online parallel accumulation–serial fragmentation (PASEF) with a novel trapped ion mobility mass spectrometer

F Meier, AD Brunner, S Koch, H Koch, M Lubeck… - Molecular & Cellular …, 2018 - ASBMB
In bottom-up proteomics, peptides are separated by liquid chromatography with elution peak
widths in the range of seconds, whereas mass spectra are acquired in about 100 …

Parallel accumulation–serial fragmentation (PASEF): multiplying sequencing speed and sensitivity by synchronized scans in a trapped ion mobility device

F Meier, S Beck, N Grassl, M Lubeck… - Journal of proteome …, 2015 - ACS Publications
In liquid chromatography-mass spectrometry (LC-MS)-based proteomics, many precursors
elute from the column simultaneously. In data-dependent analyses, these precursors are …

Ion mobility–mass spectrometry analysis of large protein complexes

BT Ruotolo, JLP Benesch, AM Sandercock, SJ Hyung… - Nature protocols, 2008 - nature.com
Here we describe a detailed protocol for both data collection and interpretation with respect
to ion mobility–mass spectrometry analysis of large protein assemblies. Ion mobility is a …

[HTML][HTML] Proteomics: challenges, techniques and possibilities to overcome biological sample complexity

K Chandramouli, PY Qian - Human genomics and proteomics: HGP, 2009 - ncbi.nlm.nih.gov
Proteomics is the large-scale study of the structure and function of proteins in complex
biological sample. Such an approach has the potential value to understand the complex …

Ion mobility mass spectrometry of peptide ions: effects of drift gas and calibration strategies

MF Bush, IDG Campuzano, CV Robinson - Analytical chemistry, 2012 - ACS Publications
One difficulty in using ion mobility (IM) mass spectrometry (MS) to improve the specificity of
peptide ion assignments is that IM separations are performed using a range of pressures …

Deep learning the collisional cross sections of the peptide universe from a million experimental values

F Meier, ND Köhler, AD Brunner, JMH Wanka… - Nature …, 2021 - nature.com
The size and shape of peptide ions in the gas phase are an under-explored dimension for
mass spectrometry-based proteomics. To investigate the nature and utility of the peptide …

Antibiotic resistance diagnosis in ESKAPE pathogens—a review on proteomic perspective

S Kalpana, WY Lin, YC Wang, Y Fu, A Lakshmi… - Diagnostics, 2023 - mdpi.com
Antibiotic resistance has emerged as an imminent pandemic. Rapid diagnostic assays
distinguish bacterial infections from other diseases and aid antimicrobial stewardship …

Review on ion mobility spectrometry. Part 2: hyphenated methods and effects of experimental parameters

R Cumeras, E Figueras, CE Davis, JI Baumbach… - Analyst, 2015 - pubs.rsc.org
Ion Mobility Spectrometry (IMS) is a widely used and 'well-known'technique of ion separation
in the gaseous phase based on the differences of ion mobilities under an electric field. This …