Profiling cell identity and tissue architecture with single-cell and spatial transcriptomics

GS Gulati, JP D'Silva, Y Liu, L Wang… - … Reviews Molecular Cell …, 2024 - nature.com
Single-cell transcriptomics has broadened our understanding of cellular diversity and gene
expression dynamics in healthy and diseased tissues. Recently, spatial transcriptomics has …

Spatial landscapes of cancers: insights and opportunities

J Chen, L Larsson, A Swarbrick… - Nature Reviews Clinical …, 2024 - nature.com
Solid tumours comprise many different cell types organized in spatially structured
arrangements, with substantial intratumour and intertumour heterogeneity. Advances in …

Exploring the heterogeneous targets of metabolic aging at single-cell resolution

S Sun, M Jiang, S Ma, J Ren, GH Liu - Trends in Endocrinology & …, 2024 - cell.com
Our limited understanding of metabolic aging poses major challenges to comprehending the
diverse cellular alterations that contribute to age-related decline, and to devising targeted …

SpaDiT: diffusion transformer for spatial gene expression prediction using scRNA-seq

X Li, F Zhu, W Min - Briefings in Bioinformatics, 2024 - academic.oup.com
The rapid development of spatially resolved transcriptomics (SRT) technologies has
provided unprecedented opportunities for exploring the structure of specific organs or …

Advancing immunotherapy for melanoma: the critical role of single-cell analysis in identifying predictive biomarkers

R He, J Lu, J Feng, Z Lu, K Shen, K Xu, H Luo… - Frontiers in …, 2024 - frontiersin.org
Melanoma, a malignant skin cancer arising from melanocytes, exhibits rapid metastasis and
a high mortality rate, especially in advanced stages. Current treatment modalities, including …

Androgen receptor signalling in non-prostatic malignancies: challenges and opportunities

GP Dotto, A Buckinx, BC Özdemir, C Simon - Nature Reviews Cancer, 2024 - nature.com
The androgen receptor (AR) signalling pathway has been intensively studied in the context
of prostate cancer, where androgen deprivation therapy is part of the standard of care for …

Inferring single-cell resolution spatial gene expression via fusing spot-based spatial transcriptomics, location, and histology using GCN

S Xue, F Zhu, J Chen, W Min - Briefings in Bioinformatics, 2025 - academic.oup.com
Spatial transcriptomics (ST technology allows for the detection of cellular transcriptome
information while preserving the spatial location of cells. This capability enables researchers …

Single-cell and Spatial Transcriptomics Reveals Ferroptosis as The Most Enriched Programmed Cell Death Process in Hemorrhage Stroke-induced Oligodendrocyte …

L Gu, H Chen, R Geng, M Sun, Q Shi… - International …, 2024 - pmc.ncbi.nlm.nih.gov
Intracerebral hemorrhage (ICH) is a severe stroke subtype with limited therapeutic options.
Programmed cell death (PCD) is crucial for immunological balance, and includes …

Microfluidics for morpholomics and spatial omics applications

NV Menon, J Lee, T Tang, CT Lim - Lab on a Chip, 2025 - pubs.rsc.org
Creative designs, precise fluidic manipulation, and automation have supported the
development of microfluidics for single-cell applications. Together with the advancements in …

Advanced Polymeric Nanoparticles for Cancer Immunotherapy: Materials Engineering, Immunotherapeutic Mechanism and Clinical Translation

W Jia, Y Wu, Y Xie, M Yu, Y Chen - Advanced Materials, 2025 - Wiley Online Library
Cancer immunotherapy, which leverages immune system components to treat malignancies,
has emerged as a cornerstone of contemporary therapeutic strategies. Yet, critical concerns …