The role of DEAD-box ATPases in gene expression and the regulation of RNA–protein condensates

K Weis, M Hondele - Annual review of biochemistry, 2022 - annualreviews.org
DEAD-box ATPases constitute a very large protein family present in all cells, often in great
abundance. From bacteria to humans, they play critical roles in many aspects of RNA …

The RGG motif proteins: Interactions, functions, and regulations

MN Chowdhury, H Jin - Wiley Interdisciplinary Reviews: RNA, 2023 - Wiley Online Library
Proteins with motifs rich in arginines and glycines were discovered decades ago and are
functionally involved in a staggering range of essential processes in the cell. Versatile …

The human DEAD-box helicase DDX3X as a regulator of mRNA translation

CS Ryan, M Schröder - Frontiers in Cell and Developmental Biology, 2022 - frontiersin.org
The human DEAD-box protein DDX3X is an RNA remodelling enzyme that has been
implicated in various aspects of RNA metabolism. In addition, like many DEAD-box proteins …

Interface of G-quadruplex with both stabilizing and destabilizing ligands for targeting various diseases

S Chaudhary, M Kumar, M Kaushik - International Journal of Biological …, 2022 - Elsevier
Guanine-rich DNA sequences may fold back into non-canonical four-stranded secondary
structures termed as G-quadruplexes. The role of G-quadruplexes has already been well …

Cytosolic RGG RNA-binding proteins are temperature sensitive flowering time regulators in Arabidopsis

A Bleckmann, N Spitzlberger, P Denninger… - Biological …, 2023 - degruyter.com
Abstract mRNA translation is tightly regulated by various classes of RNA-binding proteins
(RBPs) during development and in response to changing environmental conditions. In this …

Mass Spectrometry for Assessing Protein–Nucleic Acid Interactions

X He, X Chen, Y Wang - Analytical chemistry, 2023 - ACS Publications
Protein− nucleic acid interactions, including the interac-tions of proteins with DNA, RNA, and
DNA/RNA hybrid, often confer important biological consequences to targeted nucleic acids …

Nonstructural N-and C-tails of Dbp2 confer the protein full helicase activities

QX Song, NN Liu, ZX Liu, YZ Zhang, S Rety… - Journal of Biological …, 2023 - ASBMB
Human DDX5 and its yeast ortholog Dbp2 are ATP-dependent RNA helicases that play a
key role in normal cell processes, cancer development, and viral infection. The crystal …

DEAD-box RNA helicase Dbp2 binds to G-quadruplex nucleic acids and regulates different conformation of G-quadruplex DNA

QX Song, CW Lai, NN Liu, XM Hou, XG Xi - Biochemical and Biophysical …, 2022 - Elsevier
Abstract G-quadruplexes (G4s) are important in regulating DNA replication, repair and RNA
transcription through interactions with specialized proteins. Dbp2 has been identified as a …

[HTML][HTML] The translational landscape as regulated by the RNA helicase DDX3

JT Park, S Oh - BMB reports, 2022 - ncbi.nlm.nih.gov
Continuously renewing the proteome, translation is exquisitely controlled by a number of
dedicated factors that interact with the ribosome. The RNA helicase DDX3 belonging to the …

G4-interacting proteins endangering genomic stability at G4 DNA-forming sites

N Kim - Biochemical Society Transactions, 2023 - portlandpress.com
In guanine-rich DNA strands, base-base interactions among guanines allow the
conformational shift from the B-form DNA to the non-canonical quadruplex or G4 structure …