Evolving insights on how cytosine methylation affects protein–DNA binding

AC Dantas Machado, T Zhou, S Rao… - Briefings in …, 2015 - academic.oup.com
Many anecdotal observations exist of a regulatory effect of DNA methylation on gene
expression. However, in general, the underlying mechanisms of this effect are poorly …

The physics of epigenetics

R Cortini, M Barbi, BR Caré, C Lavelle, A Lesne… - Reviews of Modern …, 2016 - APS
In higher organisms, all cells share the same genome, but every cell expresses only a
limited and specific set of genes that defines the cell type. During cell division, not only the …

MeCP2 binding to DNA depends upon hydration at methyl-CpG

KL Ho, IW McNae, L Schmiedeberg, RJ Klose, AP Bird… - Molecular cell, 2008 - cell.com
MeCP2 is an essential transcriptional repressor that mediates gene silencing through
binding to methylated DNA. Binding specificity has been thought to depend on hydrophobic …

Crystal structure of a double-stranded DNA containing a cisplatin interstrand cross-link at 1.63 Å resolution: hydration at the platinated site

F Coste, JM Malinge, L Serre, M Leng… - Nucleic acids …, 1999 - academic.oup.com
Abstract cis-diamminedichloroplatinum (II)(cisplatin) is a powerful anti-tumor drug whose
target is cellular DNA. In the reaction between DNA and cisplatin, covalent intrastrand and …

Cytosine methylation alters DNA mechanical properties

PMD Severin, X Zou, HE Gaub… - Nucleic acids …, 2011 - academic.oup.com
DNA methylation plays an essential role in transcriptional control of organismal
development in epigenetics, from turning off a specific gene to inactivation of entire …

Modifiable risk factors in periodontal disease: epigenetic regulation of gene expression in the inflammatory response

SP Barros, S Offenbacher - Periodontology 2000, 2014 - Wiley Online Library
Epigenetics as a modifiable risk factor in periodontal diseases has been investigated in light
of the current knowledge of how chronic infection and inflammation can affect gene‐specific …

How sequence defines structure: a crystallographic map of DNA structure and conformation

FA Hays, A Teegarden, ZJR Jones… - Proceedings of the …, 2005 - National Acad Sciences
The fundamental question of how sequence defines conformation is explicitly answered if
the structures of all possible sequences of a macromolecule are determined. We present …

Zinc finger readers of methylated DNA

NO Hudson, BA Buck-Koehntop - Molecules, 2018 - mdpi.com
DNA methylation is a prevalent epigenetic modification involved in regulating a number of
essential cellular processes, including genomic accessibility and transcriptional outcomes …

Structural insights into how 5-hydroxymethylation influences transcription factor binding

L Lercher, MA McDonough, AH El-Sagheer… - Chemical …, 2014 - pubs.rsc.org
Transcription factor binding and high resolution crystallographic studies (1.3 Å) of Dickerson–
Drew duplexes with cytosine, methylcytosine and hydroxymethylcytosine bases provide …

Demethylation of (Cytosine-5-C-methyl) DNA and regulation of transcription in the epigenetic pathways of cancer development

SK Patra, A Patra, F Rizzi, TC Ghosh… - Cancer and Metastasis …, 2008 - Springer
Cancer cells and tissues exhibit genome wide hypomethylation and regional
hypermethylation. CpG-methylation of DNA (Me CpG-DNA) is defined as the formation of a …