Abiotic stress responses and microbe-mediated mitigation in plants: the omics strategies

KK Meena, AM Sorty, UM Bitla, K Choudhary… - Frontiers in plant …, 2017 - frontiersin.org
Abiotic stresses are the foremost limiting factors for agricultural productivity. Crop plants
need to cope up adverse external pressure created by environmental and edaphic …

Genotyping-by-sequencing (GBS), an ultimate marker-assisted selection (MAS) tool to accelerate plant breeding

J He, X Zhao, A Laroche, ZX Lu, HK Liu… - Frontiers in plant …, 2014 - frontiersin.org
Marker-assisted selection (MAS) refers to the use of molecular markers to assist phenotypic
selections in crop improvement. Several types of molecular markers, such as single …

An improved genotyping by sequencing (GBS) approach offering increased versatility and efficiency of SNP discovery and genotyping

H Sonah, M Bastien, E Iquira, A Tardivel, G Légaré… - PloS one, 2013 - journals.plos.org
Highly parallel SNP genotyping platforms have been developed for some important crop
species, but these platforms typically carry a high cost per sample for first-time or small-scale …

GMATA: an integrated software package for genome-scale SSR mining, marker development and viewing

X Wang, L Wang - Frontiers in plant science, 2016 - frontiersin.org
Simple sequence repeats (SSRs), also referred to as microsatellites, are highly variable
tandem DNAs that are widely used as genetic markers. The increasing availability of whole …

Integrating omic approaches for abiotic stress tolerance in soybean

R Deshmukh, H Sonah, G Patil, W Chen… - Frontiers in Plant …, 2014 - frontiersin.org
Soybean production is greatly influenced by abiotic stresses imposed by environmental
factors such as drought, water submergence, salt, and heavy metals. A thorough …

Advances in omics approaches for abiotic stress tolerance in tomato

J Chaudhary, P Khatri, P Singla, S Kumawat, A Kumari… - Biology, 2019 - mdpi.com
Tomato, one of the most important crops worldwide, has a high demand in the fresh fruit
market and processed food industries. Despite having considerably high productivity …

Genome-Wide Development and Use of Microsatellite Markers for Large-Scale Genotyping Applications in Foxtail Millet [Setaria italica (L.)]

G Pandey, G Misra, K Kumari, S Gupta… - DNA …, 2013 - academic.oup.com
The availability of well-validated informative co-dominant microsatellite markers and
saturated genetic linkage map has been limited in foxtail millet (Setaria italica L.). In view of …

Genic microsatellite marker characterization and development in little millet (Panicum sumatrense) using transcriptome sequencing

H Desai, R Hamid, Z Ghorbanzadeh, N Bhut… - Scientific reports, 2021 - nature.com
Little millet is a climate-resilient and high-nutrient value plant. The lack of molecular markers
severely limits the adoption of modern genomic approaches in millet breeding studies. Here …

Development of eSSR-Markers in Setaria italica and Their Applicability in Studying Genetic Diversity, Cross-Transferability and Comparative Mapping in Millet and …

K Kumari, M Muthamilarasan, G Misra, S Gupta… - PloS one, 2013 - journals.plos.org
Foxtail millet (Setaria italica L.) is a tractable experimental model crop for studying functional
genomics of millets and bioenergy grasses. But the limited availability of genomic resources …

Comparative Analyses of Five Complete Chloroplast Genomes from the Genus Pterocarpus (Fabacaeae)

Z Hong, Z Wu, K Zhao, Z Yang, N Zhang, J Guo… - International Journal of …, 2020 - mdpi.com
Pterocarpus is a genus of trees mainly distributed in tropical Asia, Africa, and South America.
Some species of Pterocarpus are rosewood tree species, having important economic value …