Conformational Preferences of Modified Nucleoside N(4)-Acetylcytidine, ac4C Occur at “Wobble” 34th Position in the Anticodon Loop of tRNA

BV Kumbhar, AD Kamble, KD Sonawane - Cell Biochemistry and …, 2013 - Springer
Conformational preferences of modified nucleoside, N (4)-acetylcytidine, ac 4 C have been
investigated using quantum chemical semi-empirical RM1 method. Automated geometry …

[HTML][HTML] Quantum chemistry of nucleic acids: how it could help and when it is necessary

EB Starikov - Journal of Photochemistry and Photobiology C …, 2002 - Elsevier
A critical survey of the most recent quantum-chemical studies on nucleic acids and their
constituents is given. Special reference is made to physico-chemical mechanisms of charge …

Comparative Structural Dynamics of tRNAPhe with Respect to Hinge Region Methylated Guanosine: A Computational Approach

KD Sonawane, RS Bavi, SB Sambhare… - Cell Biochemistry and …, 2016 - Springer
Transfer RNAs (tRNAs) contain various uniquely modified nucleosides thought to be useful
for maintaining the structural stability of tRNAs. However, their significance for upholding the …

Conformational Preferences of Modified Nucleoside N2-methylguanosine (m2G) and Its Derivative N2, N2-dimethylguanosine (m 2 2 G) …

RS Bavi, AD Kamble, NM Kumbhar… - Cell Biochemistry and …, 2011 - Springer
Conformational preferences of the modified nucleosides N 2-methylguanosine (m 2 G) and
N 2, N 2-dimethylguanosine (m 2 2 G) have been studied theoretically by using quantum …

Conformational Preferences of Modified Nucleoside 5-Taurinomethyluridine, τm5U Occur at 'wobble' 34th Position in the Anticodon Loop of tRNA

AS Kamble, BV Kumbhar, SB Sambhare… - Cell Biochemistry and …, 2015 - Springer
Conformational preferences of hypermodified nucleoside 5-taurinomethyluridine 5′-
monophoshate 'p-τm 5 U'(–CH 2–NH 2+–CH 2–CH 2–SO 3−) have been investigated using …

Structural significance of hypermodified nucleic acid base hydroxywybutine (OHyW) which occur at 37th position in the anticodon loop of yeast tRNAPhe

NM Kumbhar, BV Kumbhar, KD Sonawane - Journal of Molecular Graphics …, 2012 - Elsevier
Conformational preferences of hypermodified nucleic acid base hydroxywybutine (OHyW)
have been studied using quantum chemical single point semi-empirical PM3 method …

Structural significance of modified nucleosides k 2 C and t 6 A present in the anticodon loop of tRNA Ile

SB Sambhare, BV Kumbhar, AD Kamble, RS Bavi… - RSC Advances, 2014 - pubs.rsc.org
The structural significance of the hypermodified nucleosides lysidine (k2C) and N6-(N-
threonylcarbonyl) adenosine (t6A) present in the anticodon loop of E. coli tRNAIle has not …

Iso-energetic multiple conformations of hypermodified nucleic acid base wybutine (yW) which occur at 37th position in anticodon loop of tRNAPhe

NM Kumbhar, KD Sonawane - Journal of Molecular Graphics and …, 2011 - Elsevier
Conformational preferences of wybutine (yW) have been studied by quantum chemical semi-
empirical Perturbative Configuration Interaction with Localized Orbitals (PCILO) and PM3 …

Structural significance of modified nucleoside 5-taurinomethyl-2-thiouridine, τm5s2U, found at 'wobble' position in anticodon loop of human mitochondrial tRNALys

AS Kamble, SB Sambhare, PM Fandilolu… - Structural Chemistry, 2016 - Springer
The myoclonus epilepsy associated with ragged-red fibers (MERRF) is a mitochondrial
encephalomyopathic disease caused due to the lack of hypermodified nucleoside 5 …

Conformational Preferences of Hypermodified Nucleoside Lysidine (k2C) Occurring at “Wobble” Position in Anticodon Loop of tRNAIle

KD Sonawane, R Tewari - Nucleosides, Nucleotides and Nucleic …, 2008 - Taylor & Francis
Conformational preferences of hypermodified nucleoside, 4-amino-2-(N6-lysino)-1-(β-D-
ribofuranosyl) pyrimidinium (Lysidine or 2-lysyl cytidine), usually designated as k2C, have …