A uniform system for the annotation of vertebrate microRNA genes and the evolution of the human microRNAome

B Fromm, T Billipp, LE Peck, M Johansen… - Annual review of …, 2015 - annualreviews.org
Although microRNAs (miRNAs) are among the most intensively studied molecules of the
past 20 years, determining what is and what is not a miRNA has not been straightforward …

Evolution of microRNA diversity and regulation in animals

E Berezikov - Nature Reviews Genetics, 2011 - nature.com
In the past decade, microRNAs (miRNAs) have been uncovered as key regulators of gene
expression at the post-transcriptional level. The ancient origin of miRNAs, their dramatic …

The roles of microRNAs in mouse development

B DeVeale, J Swindlehurst-Chan… - Nature Reviews Genetics, 2021 - nature.com
Hundreds of microRNAs (miRNAs) are expressed in distinct spatial and temporal patterns
during embryonic and postnatal mouse development. The loss of all miRNAs through the …

The evolution of gene regulation by transcription factors and microRNAs

K Chen, N Rajewsky - Nature Reviews Genetics, 2007 - nature.com
Abstract Changes in the patterns of gene expression are widely believed to underlie many of
the phenotypic differences within and between species. Although much emphasis has been …

The amphioxus genome and the evolution of the chordate karyotype

NH Putnam, T Butts, DEK Ferrier, RF Furlong… - Nature, 2008 - nature.com
Abstract Lancelets ('amphioxus') are the modern survivors of an ancient chordate lineage,
with a fossil record dating back to the Cambrian period. Here we describe the structure and …

Mammalian mirtron genes

E Berezikov, WJ Chung, J Willis, E Cuppen, EC Lai - Molecular cell, 2007 - cell.com
Mirtrons are alternative precursors for microRNA biogenesis that were recently described in
invertebrates. These short hairpin introns use splicing to bypass Drosha cleavage, which is …

Early origins and evolution of microRNAs and Piwi-interacting RNAs in animals

A Grimson, M Srivastava, B Fahey, BJ Woodcroft… - Nature, 2008 - nature.com
In bilaterian animals, such as humans, flies and worms, hundreds of microRNAs (miRNAs),
some conserved throughout bilaterian evolution, collectively regulate a substantial fraction …

Origins and evolution of eukaryotic RNA interference

SA Shabalina, EV Koonin - Trends in ecology & evolution, 2008 - cell.com
Small interfering RNAs (siRNAs) and genome-encoded microRNAs (miRNAs) silence genes
via complementary interactions with mRNAs. With thousands of miRNA genes identified and …

The deep evolution of metazoan microRNAs

BM Wheeler, AM Heimberg, VN Moy… - Evolution & …, 2009 - Wiley Online Library
SUMMARY microRNAs (miRNAs) are approximately 22‐nucleotide noncoding RNA
regulatory genes that are key players in cellular differentiation and homeostasis. They might …

Noncoding RNA in development

PP Amaral, JS Mattick - Mammalian genome, 2008 - Springer
Non-protein-coding sequences increasingly dominate the genomes of multicellular
organisms as their complexity increases, in contrast to protein-coding genes, which remain …