Translating eco-evolutionary biology into therapy to tackle antibiotic resistance

F Sanz-García, T Gil-Gil, P Laborda, P Blanco… - Nature Reviews …, 2023 - nature.com
Antibiotic resistance is currently one of the most important public health problems. The
golden age of antibiotic discovery ended decades ago, and new approaches are urgently …

[HTML][HTML] Antibiotic resistance: time of synthesis in a post-genomic age

T Gil-Gil, LE Ochoa-Sánchez, F Baquero… - Computational and …, 2021 - Elsevier
Antibiotic resistance has been highlighted by international organizations, including World
Health Organization, World Bank and United Nations, as one of the most relevant global …

Comparative metabolomics and transcriptomics reveal multiple pathways associated with polymyxin killing in Pseudomonas aeruginosa

ML Han, Y Zhu, DJ Creek, YW Lin, AD Gutu… - …, 2019 - Am Soc Microbiol
Polymyxins are a last-line therapy against multidrug-resistant Pseudomonas aeruginosa;
however, resistance to polymyxins has been increasingly reported. Therefore …

Genome-scale metabolic modeling for unraveling molecular mechanisms of high threat pathogens

M Sertbas, KO Ulgen - Frontiers in Cell and Developmental Biology, 2020 - frontiersin.org
Pathogens give rise to a wide range of diseases threatening global health and hence
drawing public health agencies' attention to establish preventative and curative solutions …

Path to improving the life cycle and quality of genome-scale models of metabolism

Y Seif, BØ Palsson - Cell systems, 2021 - cell.com
Genome-scale models of metabolism (GEMs) are key computational tools for the systems-
level study of metabolic networks. Here, we describe the" GEM life cycle," which we …

Comparative metabolomics shows the metabolic profiles fluctuate in multi-drug resistant Escherichia coli strains

Y Lin, W Li, L Sun, Z Lin, Y Jiang, Y Ling, X Lin - Journal of proteomics, 2019 - Elsevier
In this study, two susceptible strains and two multi-drug resistant clinical Escherichia coli
strains were obtained by Kirby-Bauer method, and then a GC–MS-based metabolomics …

Systems biology: new insight into antibiotic resistance

P Francine - Microorganisms, 2022 - mdpi.com
Over the past few decades, antimicrobial resistance (AMR) has emerged as an important
threat to public health, resulting from the global propagation of multidrug-resistant strains of …

Genome-scale model of Pseudomonas aeruginosa metabolism unveils virulence and drug potentiation

S Dahal, A Renz, A Dräger, L Yang - Communications Biology, 2023 - nature.com
Pseudomonas aeruginosa is one of the leading causes of hospital-acquired infections. To
decipher the metabolic mechanisms associated with virulence and antibiotic resistance, we …

Efflux pumps and antimicrobial resistance: Paradoxical components in systems genomics

R Kabra, N Chauhan, A Kumar, P Ingale… - Progress in biophysics …, 2019 - Elsevier
Efflux pumps play a major role in the increasing antimicrobial resistance rendering a large
number of drugs of no use. Large numbers of pathogens are becoming multidrug resistant …

Advances in genome-scale metabolic modeling toward microbial community analysis of the human microbiome

E Esvap, KO Ulgen - ACS Synthetic Biology, 2021 - ACS Publications
A genome-scale metabolic model (GEM) represents metabolic pathways of an organism in a
mathematical form and can be built using biochemistry and genome annotation data. GEMs …