The nature of systems biology

FJ Bruggeman, HV Westerhoff - TRENDS in Microbiology, 2007 - cell.com
The advent of functional genomics has enabled the molecular biosciences to come a long
way towards characterizing the molecular constituents of life. Yet, the challenge for biology …

Recent advances in trypanosomatid research: genome organization, expression, metabolism, taxonomy and evolution

DA Maslov, FR Opperdoes, AY Kostygov, H Hashimi… - Parasitology, 2019 - cambridge.org
Unicellular flagellates of the family Trypanosomatidae are obligatory parasites of
invertebrates, vertebrates and plants. Dixenous species are aetiological agents of a number …

A general definition of metabolic pathways useful for systematic organization and analysis of complex metabolic networks

S Schuster, DA Fell, T Dandekar - Nature biotechnology, 2000 - nature.com
A set of linear pathways often does not capture the full range of behaviors of a metabolic
network. The concept of 'elementary flux modes' provides a mathematical tool to define and …

Can yeast glycolysis be understood in terms of in vitro kinetics of the constituent enzymes? Testing biochemistry

B Teusink, J Passarge, CA Reijenga… - European journal of …, 2000 - Wiley Online Library
This paper examines whether the in vivo behavior of yeast glycolysis can be understood in
terms of the in vitro kinetic properties of the constituent enzymes. In nongrowing, anaerobic …

Dynamic modeling of the central carbon metabolism of Escherichia coli

C Chassagnole, N Noisommit‐Rizzi… - Biotechnology and …, 2002 - Wiley Online Library
Application of metabolic engineering principles to the rational design of microbial production
processes crucially depends on the ability to describe quantitatively the systemic behavior of …

[HTML][HTML] Metabolic functions of glycosomes in trypanosomatids

PAM Michels, F Bringaud, M Herman… - Biochimica et Biophysica …, 2006 - Elsevier
Protozoan Kinetoplastida, including the pathogenic trypanosomatids of the genera
Trypanosoma and Leishmania, compartmentalize several important metabolic systems in …

Glycolysis as a target for the design of new anti-trypanosome drugs

CLMJ Verlinde, V Hannaert, C Blonski, M Willson… - Drug Resistance …, 2001 - Elsevier
Glycolysis is perceived as a promising target for new drugs against parasitic trypanosomatid
protozoa because this pathway plays an essential role in their ATP supply. Trypanosomatid …

Metabolic control analysis in drug discovery and disease

M Cascante, LG Boros, B Comin-Anduix… - Nature …, 2002 - nature.com
Metabolic control analysis (MCA) provides a quantitative description of substrate flux in
response to changes in system parameters of complex enzyme systems. Medical …

Comparative ribosome profiling reveals extensive translational complexity in different Trypanosoma brucei life cycle stages

JJ Vasquez, CC Hon, JT Vanselow… - Nucleic acids …, 2014 - academic.oup.com
While gene expression is a fundamental and tightly controlled cellular process that is
regulated at multiple steps, the exact contribution of each step remains unknown in any …

Protein Lactylation Critically Regulates Energy Metabolism in the Protozoan Parasite Trypanosoma brucei

N Zhang, N Jiang, L Yu, T Guan, X Sang… - Frontiers in Cell and …, 2021 - frontiersin.org
Lysine lactylation has been recognized as a novel post-translational modification occurring
on histones. However, lactylation in non-histone proteins, especially in proteins of early …