[HTML][HTML] High-content CRISPR screening

C Bock, P Datlinger, F Chardon, MA Coelho… - Nature Reviews …, 2022 - nature.com
CRISPR screens are a powerful source of biological discovery, enabling the unbiased
interrogation of gene function in a wide range of applications and species. In pooled …

Aptamer-based detection of circulating targets for precision medicine

L Wu, Y Wang, X Xu, Y Liu, B Lin, M Zhang… - Chemical …, 2021 - ACS Publications
The past decade has witnessed ongoing progress in precision medicine to improve human
health. As an emerging diagnostic technique, liquid biopsy can provide real-time …

Challenges in unsupervised clustering of single-cell RNA-seq data

VY Kiselev, TS Andrews, M Hemberg - Nature Reviews Genetics, 2019 - nature.com
Single-cell RNA sequencing (scRNA-seq) allows researchers to collect large catalogues
detailing the transcriptomes of individual cells. Unsupervised clustering is of central …

MOFA+: a statistical framework for comprehensive integration of multi-modal single-cell data

R Argelaguet, D Arnol, D Bredikhin, Y Deloro, B Velten… - Genome biology, 2020 - Springer
Technological advances have enabled the profiling of multiple molecular layers at single-
cell resolution, assaying cells from multiple samples or conditions. Consequently, there is a …

Ultra-high-throughput single-cell RNA sequencing and perturbation screening with combinatorial fluidic indexing

P Datlinger, AF Rendeiro, T Boenke, M Senekowitsch… - Nature …, 2021 - nature.com
Cell atlas projects and high-throughput perturbation screens require single-cell sequencing
at a scale that is challenging with current technology. To enable cost-effective single-cell …

Machine learning for integrating data in biology and medicine: Principles, practice, and opportunities

M Zitnik, F Nguyen, B Wang, J Leskovec… - Information …, 2019 - Elsevier
New technologies have enabled the investigation of biology and human health at an
unprecedented scale and in multiple dimensions. These dimensions include a myriad of …

Pooled CRISPR screening with single-cell transcriptome readout

P Datlinger, AF Rendeiro, C Schmidl, T Krausgruber… - Nature …, 2017 - nature.com
CRISPR-based genetic screens are accelerating biological discovery, but current methods
have inherent limitations. Widely used pooled screens are restricted to simple readouts …

Single-cell RNA sequencing: technical advancements and biological applications

E Hedlund, Q Deng - Molecular aspects of medicine, 2018 - Elsevier
Cells are the basic building blocks of organisms and each cell is unique. Single-cell RNA
sequencing has emerged as an indispensable tool to dissect the cellular heterogeneity and …

Uncovering an organ's molecular architecture at single-cell resolution by spatially resolved transcriptomics

J Liao, X Lu, X Shao, L Zhu, X Fan - Trends in biotechnology, 2021 - cell.com
Revealing fine-scale cellular heterogeneity among spatial context and the functional and
structural foundations of tissue architecture is fundamental within biological research and …

Challenges in measuring and understanding biological noise

N Eling, MD Morgan, JC Marioni - Nature Reviews Genetics, 2019 - nature.com
Biochemical reactions are intrinsically stochastic, leading to variation in the production of
mRNAs and proteins within cells. In the scientific literature, this source of variation is typically …