Nanopore-based technologies beyond DNA sequencing

YL Ying, ZL Hu, S Zhang, Y Qing, A Fragasso… - Nature …, 2022 - nature.com
Inspired by the biological processes of molecular recognition and transportation across
membranes, nanopore techniques have evolved in recent decades as ultrasensitive …

Engineering biological nanopore approaches toward protein sequencing

X Wei, T Penkauskas, JE Reiner, C Kennard… - ACS …, 2023 - ACS Publications
Biotechnological innovations have vastly improved the capacity to perform large-scale
protein studies, while the methods we have for identifying and quantifying individual proteins …

Unambiguous discrimination of all 20 proteinogenic amino acids and their modifications by nanopore

K Wang, S Zhang, X Zhou, X Yang, X Li, Y Wang… - Nature …, 2024 - nature.com
Natural proteins are composed of 20 proteinogenic amino acids and their post-translational
modifications (PTMs). However, due to the lack of a suitable nanopore sensor that can …

Peptide sequencing based on host–guest interaction-assisted nanopore sensing

Y Zhang, Y Yi, Z Li, K Zhou, L Liu, HC Wu - Nature methods, 2024 - nature.com
Direct protein sequencing technologies with improved sensitivity and throughput are still
needed. Here, we propose an alternative method for peptide sequencing based on …

Multi-pass, single-molecule nanopore reading of long protein strands

K Motone, D Kontogiorgos-Heintz, J Wee, K Kurihara… - Nature, 2024 - nature.com
The ability to sequence single protein molecules in their native, full-length form would
enable a more comprehensive understanding of proteomic diversity. Current technologies …

Translocation of linearized full-length proteins through an engineered nanopore under opposing electrophoretic force

A Sauciuc, B Morozzo della Rocca, MJ Tadema… - Nature …, 2024 - nature.com
Nanopores have recently been used to identify and fingerprint proteins. However, because
proteins, unlike DNA, do not have a uniform charge, the electrophoretic force cannot in …

Detection of phosphorylation post-translational modifications along single peptides with nanopores

IC Nova, J Ritmejeris, H Brinkerhoff, TJR Koenig… - Nature …, 2024 - nature.com
Current methods to detect post-translational modifications of proteins, such as phosphate
groups, cannot measure single molecules or differentiate between closely spaced …

Unidirectional single-file transport of full-length proteins through a nanopore

L Yu, X Kang, F Li, B Mehrafrooz, A Makhamreh… - Nature …, 2023 - nature.com
The electrical current blockade of a peptide or protein threading through a nanopore can be
used as a fingerprint of the molecule in biosensor applications. However, threading of full …

Resolving isomeric posttranslational modifications using a biological nanopore as a sensor of molecular shape

T Ensslen, K Sarthak, A Aksimentiev… - Journal of the …, 2022 - ACS Publications
The chemical nature and precise position of posttranslational modifications (PTMs) in
proteins or peptides are crucial for various severe diseases, such as cancer. State-of-the-art …

Identification of single amino acid chiral and positional isomers using an electrostatically asymmetric nanopore

J Wang, JD Prajapati, F Gao, YL Ying… - Journal of the …, 2022 - ACS Publications
Chirality is essential in nearly all biological organizations and chemical reactions but is
rarely considered due to technical limitations in identifying L/D isomerization. Using OmpF, a …