Graph representation learning in biomedicine and healthcare

MM Li, K Huang, M Zitnik - Nature Biomedical Engineering, 2022 - nature.com
Networks—or graphs—are universal descriptors of systems of interacting elements. In
biomedicine and healthcare, they can represent, for example, molecular interactions …

[HTML][HTML] Knowledge graphs: Opportunities and challenges

C Peng, F Xia, M Naseriparsa, F Osborne - Artificial Intelligence Review, 2023 - Springer
With the explosive growth of artificial intelligence (AI) and big data, it has become vitally
important to organize and represent the enormous volume of knowledge appropriately. As …

Deep bidirectional language-knowledge graph pretraining

M Yasunaga, A Bosselut, H Ren… - Advances in …, 2022 - proceedings.neurips.cc
Pretraining a language model (LM) on text has been shown to help various downstream
NLP tasks. Recent works show that a knowledge graph (KG) can complement text data …

Ogb-lsc: A large-scale challenge for machine learning on graphs

W Hu, M Fey, H Ren, M Nakata, Y Dong… - arXiv preprint arXiv …, 2021 - arxiv.org
Enabling effective and efficient machine learning (ML) over large-scale graph data (eg,
graphs with billions of edges) can have a great impact on both industrial and scientific …

Learning intents behind interactions with knowledge graph for recommendation

X Wang, T Huang, D Wang, Y Yuan, Z Liu… - Proceedings of the web …, 2021 - dl.acm.org
Knowledge graph (KG) plays an increasingly important role in recommender systems. A
recent technical trend is to develop end-to-end models founded on graph neural networks …

Neural bellman-ford networks: A general graph neural network framework for link prediction

Z Zhu, Z Zhang, LP Xhonneux… - Advances in Neural …, 2021 - proceedings.neurips.cc
Link prediction is a very fundamental task on graphs. Inspired by traditional path-based
methods, in this paper we propose a general and flexible representation learning framework …

Toward better drug discovery with knowledge graph

X Zeng, X Tu, Y Liu, X Fu, Y Su - Current opinion in structural biology, 2022 - Elsevier
Drug discovery is the process of new drug identification. This process is driven by the
increasing data from existing chemical libraries and data banks. The knowledge graph is …

[HTML][HTML] Artificial intelligence in COVID-19 drug repurposing

Y Zhou, F Wang, J Tang, R Nussinov… - The Lancet Digital …, 2020 - thelancet.com
Drug repurposing or repositioning is a technique whereby existing drugs are used to treat
emerging and challenging diseases, including COVID-19. Drug repurposing has become a …

Open graph benchmark: Datasets for machine learning on graphs

W Hu, M Fey, M Zitnik, Y Dong, H Ren… - Advances in neural …, 2020 - proceedings.neurips.cc
Abstract We present the Open Graph Benchmark (OGB), a diverse set of challenging and
realistic benchmark datasets to facilitate scalable, robust, and reproducible graph machine …

SimKGC: Simple contrastive knowledge graph completion with pre-trained language models

L Wang, W Zhao, Z Wei, J Liu - arXiv preprint arXiv:2203.02167, 2022 - arxiv.org
Knowledge graph completion (KGC) aims to reason over known facts and infer the missing
links. Text-based methods such as KGBERT (Yao et al., 2019) learn entity representations …