Best practices for single-cell analysis across modalities

L Heumos, AC Schaar, C Lance, A Litinetskaya… - Nature Reviews …, 2023 - nature.com
Recent advances in single-cell technologies have enabled high-throughput molecular
profiling of cells across modalities and locations. Single-cell transcriptomics data can now …

High-throughput and single-cell T cell receptor sequencing technologies

JA Pai, AT Satpathy - Nature methods, 2021 - nature.com
T cells express T cell receptors (TCRs) composed of somatically recombined TCRα and
TCRβ chains, which mediate recognition of major histocompatibility complex (MHC)–antigen …

Combination anti-HIV antibodies provide sustained virological suppression

MC Sneller, J Blazkova, JS Justement, V Shi… - Nature, 2022 - nature.com
Antiretroviral therapy is highly effective in suppressing human immunodeficiency virus (HIV).
However, eradication of the virus in individuals with HIV has not been possible to date …

Peripheral T cell expansion predicts tumour infiltration and clinical response

TD Wu, S Madireddi, PE de Almeida, R Banchereau… - Nature, 2020 - nature.com
Despite the resounding clinical success in cancer treatment of antibodies that block the
interaction of PD1 with its ligand PDL1, the mechanisms involved remain unknown. A major …

VDJdb in 2019: database extension, new analysis infrastructure and a T-cell receptor motif compendium

DV Bagaev, RMA Vroomans, J Samir… - Nucleic acids …, 2020 - academic.oup.com
Here, we report an update of the VDJdb database with a substantial increase in the number
of T-cell receptor (TCR) sequences and their cognate antigens. The update further provides …

Targeting of multiple tumor-associated antigens by individual T cell receptors during successful cancer immunotherapy

G Dolton, C Rius, A Wall, B Szomolay, V Bianchi… - Cell, 2023 - cell.com
The T cells of the immune system can target tumors and clear solid cancers following tumor-
infiltrating lymphocyte (TIL) therapy. We used combinatorial peptide libraries and a …

Single-cell atlas of colonic CD8+ T cells in ulcerative colitis

D Corridoni, A Antanaviciute, T Gupta… - Nature medicine, 2020 - nature.com
Colonic antigen-experienced lymphocytes such as tissue-resident memory CD8+ T cells can
respond rapidly to repeated antigen exposure. However, their cellular phenotypes and the …

Investigation of product-derived lymphoma following infusion of piggyBac-modified CD19 chimeric antigen receptor T cells

KP Micklethwaite, K Gowrishankar… - Blood, The Journal …, 2021 - ashpublications.org
We performed a phase 1 clinical trial to evaluate outcomes in patients receiving donor-
derived CD19-specific chimeric antigen receptor (CAR) T cells for B-cell malignancy that …

Neoantigens: promising targets for cancer therapy

N Xie, G Shen, W Gao, Z Huang, C Huang… - Signal transduction and …, 2023 - nature.com
Recent advances in neoantigen research have accelerated the development and regulatory
approval of tumor immunotherapies, including cancer vaccines, adoptive cell therapy and …

Structure-based prediction of T cell receptor: peptide-MHC interactions

P Bradley - Elife, 2023 - elifesciences.org
The regulatory and effector functions of T cells are initiated by the binding of their cell-
surface T cell receptor (TCR) to peptides presented by major histocompatibility complex …