Making sense of cancer genomic data

L Chin, WC Hahn, G Getz, M Meyerson - Genes & development, 2011 - genesdev.cshlp.org
High-throughput tools for nucleic acid characterization now provide the means to conduct
comprehensive analyses of all somatic alterations in the cancer genomes. Both large-scale …

Vaccinology in the genome era

CD Rinaudo, JL Telford, R Rappuoli… - The Journal of clinical …, 2009 - Am Soc Clin Investig
Vaccination has played a significant role in controlling and eliminating life-threatening
infectious diseases throughout the world, and yet currently licensed vaccines represent only …

Error rate comparison during polymerase chain reaction by DNA polymerase

P McInerney, P Adams, MZ Hadi - Molecular biology …, 2014 - Wiley Online Library
As larger‐scale cloning projects become more prevalent, there is an increasing need for
comparisons among high fidelity DNA polymerases used for PCR amplification. All …

Oligoribonuclease is the primary degradative enzyme for pGpG in Pseudomonas aeruginosa that is required for cyclic-di-GMP turnover

MW Orr, GP Donaldson, GB Severin… - Proceedings of the …, 2015 - National Acad Sciences
The bacterial second messenger cyclic di-GMP (c-di-GMP) controls biofilm formation and
other phenotypes relevant to pathogenesis. Cyclic-di-GMP is synthesized by diguanylate …

Systematic Identification of Cyclic-di-GMP Binding Proteins in Vibrio cholerae Reveals a Novel Class of Cyclic-di-GMP-Binding ATPases Associated with Type II …

KG Roelofs, CJ Jones, SR Helman, X Shang… - PLoS …, 2015 - journals.plos.org
Cyclic-di-GMP (c-di-GMP) is a ubiquitous bacterial signaling molecule that regulates a
variety of complex processes through a diverse set of c-di-GMP receptor proteins. We have …

The key role of genomics in modern vaccine and drug design for emerging infectious diseases

KL Seib, G Dougan, R Rappuoli - PLoS genetics, 2009 - journals.plos.org
It can be argued that the arrival of the “genomics era” has significantly shifted the paradigm
of vaccine and therapeutics development from microbiological to sequence-based …

Protein microarrays: high-throughput tools for proteomics

O Stoevesandt, MJ Taussig, M He - Expert Review of Proteomics, 2009 - Taylor & Francis
Protein microarrays are versatile tools for parallel, miniaturized screening of binding events
involving large numbers of immobilized proteins in a time-and cost-effective manner. They …

Rapid empirical discovery of optimal peptides for targeted proteomics

AB Stergachis, B MacLean, K Lee… - Nature …, 2011 - nature.com
We report a method for high-throughput, cost-efficient empirical discovery of optimal
proteotypic peptides and fragment ions for targeted proteomics applications using in vitro …

Site‐specific recombinational cloning using gateway and in‐fusion cloning schemes

J Park, AL Throop, J LaBaer - Current protocols in molecular …, 2015 - Wiley Online Library
The comprehensive study of protein structure and function, or proteomics, depends on the
obtainability of full‐length cDNAs in species‐specific expression vectors and subsequent …

Cell-free protein synthesis: applications in proteomics and biotechnology

M He - New biotechnology, 2008 - Elsevier
Protein production is one of the key steps in biotechnology and functional proteomics.
Expression of proteins in heterologous hosts (such as in E. coli) is generally lengthy and …