Recent developments in machine learning for mass spectrometry

AG Beck, M Muhoberac, CE Randolph… - ACS Measurement …, 2024 - ACS Publications
Statistical analysis and modeling of mass spectrometry (MS) data have a long and rich
history with several modern MS-based applications using statistical and chemometric …

Recent advances in mass spectrometry-based structural elucidation techniques

X Ma - Molecules, 2022 - mdpi.com
Mass spectrometry (MS) has become the central technique that is extensively used for the
analysis of molecular structures of unknown compounds in the gas phase. It manipulates the …

Graph to Activation Energy Models Easily Reach Irreducible Errors but Show Limited Transferability

SM Vadaddi, Q Zhao, BM Savoie - The Journal of Physical …, 2024 - ACS Publications
Activation energy characterization of competing reactions is a costly but crucial step for
understanding the kinetic relevance of distinct reaction pathways, product yields, and myriad …

Learning Relationships Between Chemical and Physical Stability for Peptide Drug Development

J Fine, PR Wijewardhane, SDB Mohideen… - Pharmaceutical …, 2023 - Springer
Abstract Purpose or Objective Chemical and physical stabilities are two key features
considered in pharmaceutical development. Chemical stability is typically reported as a …

ANI/EFP: Modeling Long-Range Interactions in ANI Neural Network with Effective Fragment Potentials

S Haghiri, C Viquez Rojas, S Bhat… - Journal of Chemical …, 2024 - ACS Publications
Deep learning Neural Networks (NN) have been developed in the field of molecular
modeling for the purpose of circumventing the high computational cost of quantum …

Structure Based Machine Learning Prediction of Retention Times for LC Method Development of Pharmaceuticals

J Fine, AKP Mann, P Aggarwal - Pharmaceutical Research, 2024 - Springer
Purpose Significant resources are spent on developing robust liquid chromatography (LC)
methods with optimum conditions for all project in the pipeline. Although, data-driven …

Determination of the compound class and functional groups in protonated analytes via diagnostic gas‐phase ion‐molecule reactions

JKY Liu, E Niyonsaba, KZ Alzarieni… - Mass Spectrometry …, 2023 - Wiley Online Library
Diagnostic gas‐phase ion‐molecule reactions serve as a powerful alternative to collision‐
activated dissociation for the structural elucidation of analytes when using tandem mass …

Sodium adduct formation with graph-based machine learning can aid structural elucidation in non-targeted LC/ESI/HRMS

R Costalunga, S Tshepelevitsh, H Sepman, M Kull… - Analytica Chimica …, 2022 - Elsevier
Non-targeted screening with LC/ESI/HRMS aims to identify the structure of the detected
compounds using their retention time, exact mass, and fragmentation pattern. Challenges …

Explainable graph neural networks for organic cages

Q Yuan, FT Szczypiński, KE Jelfs - Digital Discovery, 2022 - pubs.rsc.org
The development of accurate and explicable machine learning models to predict the
properties of topologically complex systems is a challenge in materials science. Porous …

Characterization of protonated substituted Ureas by using diagnostic gas-phase ion-molecule reactions followed by collision-activated dissociation in tandem mass …

E Feng, X Ma, HI Kenttämaa - Analytical Chemistry, 2021 - ACS Publications
Substituted ureas correspond to a class of organic compounds commonly used in
agricultural and chemical fields. However, distinguishing between different ureas and …