Structure and dynamics of molecular networks: a novel paradigm of drug discovery: a comprehensive review

P Csermely, T Korcsmáros, HJM Kiss, G London… - Pharmacology & …, 2013 - Elsevier
Despite considerable progress in genome-and proteome-based high-throughput screening
methods and in rational drug design, the increase in approved drugs in the past decade did …

[HTML][HTML] Protein-protein interaction networks (PPI) and complex diseases

N Safari-Alighiarloo, M Taghizadeh… - … and Hepatology from …, 2014 - ncbi.nlm.nih.gov
The physical interaction of proteins which lead to compiling them into large densely
connected networks is a noticeable subject to investigation. Protein interaction networks are …

The database of interacting proteins: 2004 update

L Salwinski, CS Miller, AJ Smith, FK Pettit… - Nucleic acids …, 2004 - academic.oup.com
Abstract The Database of Interacting Proteins (http://dip. doe‐mbi. ucla. edu) aims to
integrate the diverse body of experimental evidence on protein–protein interactions into a …

A distributed framework for large-scale protein-protein interaction data analysis and prediction using mapreduce

L Hu, S Yang, X Luo, H Yuan… - IEEE/CAA Journal of …, 2021 - ieeexplore.ieee.org
Protein-protein interactions are of great significance for human to understand the functional
mechanisms of proteins. With the rapid development of high-throughput genomic …

Chapter 4: Protein interactions and disease

MW Gonzalez, MG Kann - PLoS computational biology, 2012 - journals.plos.org
Proteins do not function in isolation; it is their interactions with one another and also with
other molecules (eg DNA, RNA) that mediate metabolic and signaling pathways, cellular …

[PDF][PDF] Kernel methods for predicting protein–protein interactions

A Ben-Hur, WS Noble - Bioinformatics, 2005 - noble.gs.washington.edu
Motivation: Despite advances in high-throughput methods for discovering protein–protein
interactions, the interaction networks of even well-studied model organisms are sketchy at …

Online predicted human interaction database

KR Brown, I Jurisica - Bioinformatics, 2005 - academic.oup.com
Motivation: High-throughput experiments are being performed at an ever-increasing rate to
systematically elucidate protein–protein interaction (PPI) networks for model organisms …

Prediction of protein–protein interactions using random decision forest framework

XW Chen, M Liu - Bioinformatics, 2005 - academic.oup.com
Motivation: Protein interactions are of biological interest because they orchestrate a number
of cellular processes such as metabolic pathways and immunological recognition. Domains …

Evaluation of different biological data and computational classification methods for use in protein interaction prediction

Y Qi, Z Bar‐Joseph… - … : Structure, Function, and …, 2006 - Wiley Online Library
Protein–protein interactions play a key role in many biological systems. High‐throughput
methods can directly detect the set of interacting proteins in yeast, but the results are often …

Prediction of protein function using protein-protein interaction data

M Deng, K Zhang, S Mehta, T Chen… - … . IEEE Computer Society …, 2002 - ieeexplore.ieee.org
Assigning functions to novel proteins is one of the most important problems in the post-
genomic era. We develop a novel approach that applies the theory of Markov random fields …