Scaling read aligners to hundreds of threads on general-purpose processors

B Langmead, C Wilks, V Antonescu, R Charles - Bioinformatics, 2019 - academic.oup.com
Motivation General-purpose processors can now contain many dozens of processor cores
and support hundreds of simultaneous threads of execution. To make best use of these …

Genomics of rare genetic diseases—experiences from India

S Sivasubbu, V Scaria - Human genomics, 2019 - Springer
Home to a culturally heterogeneous population, India is also a melting pot of genetic
diversity. The population architecture characterized by multiple endogamous groups with …

The prehistoric peopling of Southeast Asia

H McColl, F Racimo, L Vinner, F Demeter, T Gakuhari… - Science, 2018 - science.org
The human occupation history of Southeast Asia (SEA) remains heavily debated. Current
evidence suggests that SEA was occupied by Hòabìnhian hunter-gatherers until~ 4000 …

Reconstruction of the personal information from human genome reads in gut metagenome sequencing data

Y Tomofuji, K Sonehara, T Kishikawa, Y Maeda… - Nature …, 2023 - nature.com
Human DNA present in faecal samples can result in a small number of human reads in gut
shotgun metagenomic sequencing data. However, it is presently unclear how much …

Phylogenomics from low‐coverage whole‐genome sequencing

F Zhang, Y Ding, CD Zhu, X Zhou… - Methods in Ecology …, 2019 - Wiley Online Library
Phylogenetic studies are increasingly reliant on next‐generation sequencing.
Transcriptomic and hybrid enrichment sequencing techniques remain the most prevalent …

Whole genome sequencing of elite athletes

EA Boulygina, OV Borisov, EV Valeeva… - Biology of sport, 2020 - termedia.pl
Whole genome sequencing (WGS) has great potential to explore all possible DNA variants
associated with physical performance, psychological traits and health conditions of athletes …

Estimating and accounting for genotyping errors in RAD‐seq experiments

L Bresadola, V Link, CA Buerkle… - Molecular Ecology …, 2020 - Wiley Online Library
In non‐model organisms, evolutionary questions are frequently addressed using reduced
representation sequencing techniques due to their low cost, ease of use, and because they …

Evaluation of Genomic Selection for Seven Economic Traits in Yellow Drum (Nibea albiflora)

G Liu, L Dong, L Gu, Z Han, W Zhang, M Fang… - Marine …, 2019 - Springer
Yellow drum (Nibea albiflora) is an important maricultural fish in China, and genetic
improvement is necessary for this species. This research evaluated the application of …

CONSULT: accurate contamination removal using locality-sensitive hashing

E Rachtman, V Bafna, S Mirarab - NAR Genomics and …, 2021 - academic.oup.com
A fundamental question appears in many bioinformatics applications: Does a sequencing
read belong to a large dataset of genomes from some broad taxonomic group, even when …

[HTML][HTML] 基于低深度全基因组测序分析内江猪群体结构和遗传多样性

赵真坚, 王书杰, 陈栋, 姬祥, 申琦, 余杨, 崔晟頔… - 畜牧兽医学报, 2023 - html.rhhz.net
旨在更好的了解内江猪群体结构和遗传多样性, 更好的保护和利用内江猪遗传资源.
本研究基于低深度全基因组测序, 检测了133 头(12 头公猪, 121 头母猪) 内江猪的SNP …