Current progress in network research: toward reference networks for key model organisms

BS Srinivasan, NH Shah, JA Flannick… - Briefings in …, 2007 - academic.oup.com
The collection of multiple genome-scale datasets is now routine, and the frontier of research
in systems biology has shifted accordingly. Rather than clustering a single dataset to …

[HTML][HTML] An ontology-driven semantic mashup of gene and biological pathway information: Application to the domain of nicotine dependence

SS Sahoo, O Bodenreider, JL Rutter, KJ Skinner… - Journal of biomedical …, 2008 - Elsevier
OBJECTIVES: This paper illustrates how Semantic Web technologies (especially RDF, OWL,
and SPARQL) can support information integration and make it easy to create semantic …

Informatics in neuroscience

L French, P Pavlidis - Briefings in bioinformatics, 2007 - academic.oup.com
The application of informatics to neuroscience goes far beyond 'traditional'bioinformatics
modalities such as DNA sequences. In this review, we describe how informatics is being …

Moby and Moby 2: creatures of the deep (web)

BP Vandervalk, EL McCarthy… - Briefings in …, 2009 - academic.oup.com
Facile and meaningful integration of data from disparate resources is the 'holy grail'of
bioinformatics. Some resources have begun to address this problem by providing their data …

SHARE: A web service based framework for distributed querying and reasoning on the semantic web

BP Vandervalk, EL McCarthy, MD Wilkinson - arXiv preprint arXiv …, 2013 - arxiv.org
Here we describe the SHARE system, a web service based framework for distributed
querying and reasoning on the semantic web. The main innovations of SHARE are:(1) the …

[PDF][PDF] CardioSHARE: Web Services for the Semantic Web

B Vandervalk, L McCarthy… - Semantic Web Challenge, 2008 - researchgate.net
Here we present CardioSHARE, a unique framework for querying distributed data and
performing data analysis using Semantic Web standards. CardioSHARE's two main …

Bioinformatics for neuroanatomical connectivity

LH French - 2012 - open.library.ubc.ca
Neuroscience research is increasingly dependent on bringing together large amounts of
data collected at the molecular, anatomical, functional and behavioural levels. This data is …

[PDF][PDF] Integrating gene and pathway information about nicotine dependence

SS Sahoo - Communications (NLM/NIH), 2007 - Citeseer
Objectives: This paper illustrates how Semantic Web technologies (especially RDF, OWL,
and SPARQL) can support information integration and make it easy to create semantic …