Graph machine learning in the era of large language models (llms)

W Fan, S Wang, J Huang, Z Chen, Y Song… - arXiv preprint arXiv …, 2024 - arxiv.org
Graphs play an important role in representing complex relationships in various domains like
social networks, knowledge graphs, and molecular discovery. With the advent of deep …

From Noise to Knowledge: Diffusion Probabilistic Model-Based Neural Inference of Gene Regulatory Networks

H Zhu, DK Slonim - bioRxiv, 2023 - biorxiv.org
Understanding gene regulatory networks (GRNs) is crucial for elucidating cellular
mechanisms and advancing therapeutic interventions. Original methods for GRN inference …

Clustering and visualization of single-cell RNA-seq data using path metrics

A Manousidaki, A Little, Y Xie - PLOS Computational Biology, 2024 - journals.plos.org
Recent advances in single-cell technologies have enabled high-resolution characterization
of tissue and cancer compositions. Although numerous tools for dimension reduction and …