RNAInter in 2020: RNA interactome repository with increased coverage and annotation

Y Lin, T Liu, T Cui, Z Wang, Y Zhang, P Tan… - Nucleic acids …, 2020 - academic.oup.com
Research on RNA-associated interactions has exploded in recent years, and increasing
numbers of studies are not limited to RNA–RNA and RNA–protein interactions but also …

[HTML][HTML] Bioinformatic tools for the analysis and prediction of ncRNA interactions

A Rincón-Riveros, D Morales, JA Rodríguez… - International Journal of …, 2021 - mdpi.com
Noncoding RNAs (ncRNAs) play prominent roles in the regulation of gene expression via
their interactions with other biological molecules such as proteins and nucleic acids …

MNDR v3. 0: mammal ncRNA–disease repository with increased coverage and annotation

L Ning, T Cui, B Zheng, N Wang, J Luo… - Nucleic Acids …, 2021 - academic.oup.com
Many studies have indicated that non-coding RNA (ncRNA) dysfunction is closely related to
numerous diseases. Recently, accumulated ncRNA–disease associations have made …

[HTML][HTML] Mutations in cis that affect mRNA synthesis, processing and translation

D Roos, M de Boer - Biochimica et Biophysica Acta (BBA)-Molecular Basis …, 2021 - Elsevier
Genetic mutations that cause hereditary diseases usually affect the composition of the
transcribed mRNA and its encoded protein, leading to instability of the mRNA and/or the …

cncRNAdb: a manually curated resource of experimentally supported RNAs with both protein-coding and noncoding function

Y Huang, J Wang, Y Zhao, H Wang, T Liu… - Nucleic Acids …, 2021 - academic.oup.com
RNA endowed with both protein-coding and noncoding functions is referred to as 'dual-
function RNA','binary functional RNA (bifunctional RNA)'or 'cncRNA (coding and noncoding …

Cellinker: a platform of ligand–receptor interactions for intercellular communication analysis

Y Zhang, T Liu, J Wang, B Zou, L Li, L Yao… - …, 2021 - academic.oup.com
Abstract Motivation Ligand–receptor (L–R) interactions mediate cell adhesion, recognition
and communication and play essential roles in physiological and pathological signaling …

A Hitchhiker's guide to RNA–RNA structure and interaction prediction tools

FYF Tieng, MR Abdullah-Zawawi… - Briefings in …, 2024 - academic.oup.com
RNA biology has risen to prominence after a remarkable discovery of diverse functions of
noncoding RNA (ncRNA). Most untranslated transcripts often exert their regulatory functions …

LncReader: identification of dual functional long noncoding RNAs using a multi-head self-attention mechanism

T Liu, B Zou, M He, Y Hu, Y Dou, T Cui… - Briefings in …, 2023 - academic.oup.com
Long noncoding ribonucleic acids (RNAs; LncRNAs) endowed with both protein-coding and
noncoding functions are referred to as 'dual functional lncRNAs'. Recently, dual functional …

[HTML][HTML] Biomolecule and bioentity interaction databases in systems biology: a comprehensive review

FA Baltoumas, S Zafeiropoulou, E Karatzas… - Biomolecules, 2021 - mdpi.com
Technological advances in high-throughput techniques have resulted in tremendous growth
of complex biological datasets providing evidence regarding various biomolecular …

Exploring the potential key IncRNAs with endometriosis by construction of a ceRNA network

C Gu, Y Meng, Q Meng, W Fan, M Ye… - … Journal of General …, 2021 - Taylor & Francis
Purpose The etiology and pathophysiology of endometriosis remain unclear. Current
research indicates long noncoding RNA (lncRNA) may play an important role in the …