Cancer neoantigens

TN Schumacher, W Scheper… - Annual review of …, 2019 - annualreviews.org
Malignant transformation of cells depends on accumulation of DNA damage. Over the past
years we have learned that the T cell–based immune system frequently responds to the …

A few good peptides: MHC class I-based cancer immunosurveillance and immunoevasion

D Dersh, J Hollý, JW Yewdell - Nature Reviews Immunology, 2021 - nature.com
The remarkable success of immune checkpoint inhibitors demonstrates the potential of
tumour-specific CD8+ T cells to prevent and treat cancer. Although the number of lives …

[HTML][HTML] Pharmacologic modulation of RNA splicing enhances anti-tumor immunity

SX Lu, E De Neef, JD Thomas, E Sabio, B Rousseau… - Cell, 2021 - cell.com
Although mutations in DNA are the best-studied source of neoantigens that determine
response to immune checkpoint blockade, alterations in RNA splicing within cancer cells …

NetMHCpan-4.0: improved peptide–MHC class I interaction predictions integrating eluted ligand and peptide binding affinity data

V Jurtz, S Paul, M Andreatta, P Marcatili… - The Journal of …, 2017 - journals.aai.org
Cytotoxic T cells are of central importance in the immune system's response to disease.
They recognize defective cells by binding to peptides presented on the cell surface by MHC …

T cell epitope predictions

B Peters, M Nielsen, A Sette - Annual Review of Immunology, 2020 - annualreviews.org
Throughout the body, T cells monitor MHC-bound ligands expressed on the surface of
essentially all cell types. MHC ligands that trigger a T cell immune response are referred to …

NNAlign_MA; MHC peptidome deconvolution for accurate MHC binding motif characterization and improved T-cell epitope predictions

B Alvarez, B Reynisson, C Barra, S Buus… - Molecular & Cellular …, 2019 - ASBMB
The set of peptides presented on a cell's surface by MHC molecules is known as the
immunopeptidome. Current mass spectrometry technologies allow for identification of large …

The importance of being presented: target validation by immunopeptidomics for epitope-specific immunotherapies

JP Becker, AB Riemer - Frontiers in Immunology, 2022 - frontiersin.org
Presentation of tumor-specific or tumor-associated peptides by HLA class I molecules to
CD8+ T cells is the foundation of epitope-centric cancer immunotherapies. While often in …

Identification of neoantigens in cancer cells as targets for immunotherapy

M Okada, K Shimizu, S Fujii - International Journal of Molecular Sciences, 2022 - mdpi.com
The clinical benefits of immune checkpoint blockage (ICB) therapy have been widely
reported. In patients with cancer, researchers have demonstrated the clinical potential of …

Extending the comprehensiveness of immunopeptidome analyses using isobaric peptide labeling

S Pfammatter, E Bonneil, J Lanoix, K Vincent… - Analytical …, 2020 - ACS Publications
Defining the repertoire of peptides presented by the major histocompatibility complex class I
(MHC I) is a key step toward the identification of relevant antigens for cancer …

In immunopeptidomics we need a sniper instead of a shotgun

P Faridi, AW Purcell, NP Croft - Proteomics, 2018 - Wiley Online Library
Immunopeptidomics employs the use of mass spectrometry to identify and quantify peptides
presented on the surface of cells by major histocompatibility complex (MHC; human …