Machine learning and deep learning applications in microbiome research
R Hernández Medina, S Kutuzova… - ISME …, 2022 - academic.oup.com
The many microbial communities around us form interactive and dynamic ecosystems called
microbiomes. Though concealed from the naked eye, microbiomes govern and influence …
microbiomes. Though concealed from the naked eye, microbiomes govern and influence …
The role of the probiotic Akkermansia muciniphila in brain functions: insights underpinning therapeutic potential
R Xu, Y Zhang, S Chen, Y Zeng, X Fu… - Critical reviews in …, 2023 - Taylor & Francis
The role of Akkermansia muciniphila, one of the most abundant microorganisms of the
intestinal microbiota, has been studied extensively in metabolic diseases, such as obesity …
intestinal microbiota, has been studied extensively in metabolic diseases, such as obesity …
[HTML][HTML] Host genetic regulation of human gut microbial structural variation
Although the impact of host genetics on gut microbial diversity and the abundance of specific
taxa is well established,,,,–, little is known about how host genetics regulates the genetic …
taxa is well established,,,,–, little is known about how host genetics regulates the genetic …
Co-diversification of an intestinal Mycoplasma and its salmonid host
JA Rasmussen, P Kiilerich, AS Madhun… - The ISME …, 2023 - academic.oup.com
Understanding the evolutionary relationships between a host and its intestinal resident
bacteria can transform how we understand adaptive phenotypic traits. The interplay between …
bacteria can transform how we understand adaptive phenotypic traits. The interplay between …
The gastrointestinal microbiome in dairy cattle is constrained by the deterministic driver of the region and the modified effect of diet
Abstract Background Dairy cattle (Bos taurus), especially Holstein cows, which are the
highest-producing dairy animals and are widely bred to provide milk products to humans …
highest-producing dairy animals and are widely bred to provide milk products to humans …
Microbiome breeding: conceptual and practical issues
UG Mueller, TA Linksvayer - Trends in microbiology, 2022 - cell.com
Microbiome breeding is a new artificial selection technique that seeks to change the genetic
composition of microbiomes in order to benefit plant or animal hosts. Recent experimental …
composition of microbiomes in order to benefit plant or animal hosts. Recent experimental …
Uncovering the genomic basis of an extraordinary plant invasion
Invasive species are a key driver of the global biodiversity crisis, but the drivers of
invasiveness, including the role of pathogens, remain debated. We investigated the genomic …
invasiveness, including the role of pathogens, remain debated. We investigated the genomic …
Amino acid utilization allows intestinal dominance of Lactobacillus amylovorus
The mammalian intestine harbors heterogeneous distribution of microbes among which
specific taxa (eg Lactobacillus) dominate across mammals. Deterministic factors such as …
specific taxa (eg Lactobacillus) dominate across mammals. Deterministic factors such as …
Strategies for breeding crops for future environments
The green revolution successfully increased agricultural output in the early 1960s by relying
primarily on three pillars: plant breeding, irrigation, and chemical fertilization. Today, the …
primarily on three pillars: plant breeding, irrigation, and chemical fertilization. Today, the …
Field and laboratory guidelines for reliable bioinformatic and statistical analysis of bacterial shotgun metagenomic data
Shotgun metagenomics is an increasingly cost-effective approach for profiling
environmental and host-associated microbial communities. However, due to the complexity …
environmental and host-associated microbial communities. However, due to the complexity …