Classification of transcription boundary-associated RNAs (TBARs) in animals and plants

D Yu, X Ma, Z Zuo, H Wang, Y Meng - Frontiers in Genetics, 2018 - frontiersin.org
There is increasing evidence suggesting the contribution of non-coding RNAs (ncRNAs) to
the phenotypic and physiological complexity of organisms. A novel ncRNA species has …

Improved pre-miRNAs identification through mutual information of pre-miRNA sequences and structures

X Fu, W Zhu, L Cai, B Liao, L Peng, Y Chen… - Frontiers in …, 2019 - frontiersin.org
Playing critical roles as post-transcriptional regulators, microRNAs (miRNAs) are a family of
short non-coding RNAs that are derived from longer transcripts called precursor miRNAs …

BP Neural Network Could Help Improve Pre‐miRNA Identification in Various Species

L Jiang, J Zhang, P Xuan, Q Zou - BioMed research …, 2016 - Wiley Online Library
MicroRNAs (miRNAs) are a set of short (21–24 nt) noncoding RNAs that play significant
regulatory roles in cells. In the past few years, research on miRNA‐related problems has …

Computational methods for ab initio detection of microRNAs

J Allmer, M Yousef - Frontiers in genetics, 2012 - frontiersin.org
MicroRNAs are small RNA sequences of 18–24 nucleotides in length, which serve as
templates to drive post-transcriptional gene silencing. The canonical microRNA pathway …

plantDARIO: web based quantitative and qualitative analysis of small RNA-seq data in plants

D Patra, M Fasold, D Langenberger, G Steger… - Frontiers in plant …, 2014 - frontiersin.org
High-throughput sequencing techniques have made it possible to assay an organism's
entire repertoire of small non-coding RNAs (ncRNAs) in an efficient and cost-effective …

Transcriptome-Wide Discovery of PASRs (Promoter-Associated Small RNAs) and TASRs (Terminus-Associated Small RNAs) in Arabidopsis thaliana

X Ma, N Han, C Shao, Y Meng - PloS one, 2017 - journals.plos.org
Hints from animals point to the existence of two novel small RNA (sRNA) species
surrounding the transcription start sites (TSSs) and the termini of the genes, respectively. In …

Studium mechanismu posttranskripčního a transkripčního umlčování transgenů v buněčné linii tabáku BY-2

V Čermák - 2012 - dspace.cuni.cz
RNA interference je jedním z mechanismů, který umožňuje buňkám regulovat aktivitu genů,
ovlivňovat tvorbu a udržování heterochromatinu a chránit je před invazivními nukleovými …

A miniature inverted-repeat transposable element, AddIn-MITE, located inside a WD40 gene is conserved in Andropogoneae grasses

C Grativol, F Thiebaut, S Sangi, P Montessoro… - PeerJ, 2019 - peerj.com
Miniature inverted-repeat transposable elements (MITEs) have been associated with genic
regions in plant genomes and may play important roles in the regulation of nearby genes via …

Study of RNAi mechanisms in tobacco BY-2 cell line and potato plants

D Tyč - 2020 - dspace.cuni.cz
Knowledge of the processes of RNA interference, the regulation of gene expression by small
RNAs (sRNAs), has grown at an unprecedented rate over the last 30 years. Some of the …

[PDF][PDF] Function prediction of transcription start site associated RNAs (TSSaRNAs) in Halobacterium salinarum NRC-1

YAI Adam - 2019 - academia.edu
In the last decade, studying the functions of RNA molecules and their mode of action is
being a central research subject for both experimental and computational biology. The …