Sensitivity analysis methods in the biomedical sciences

G Qian, A Mahdi - Mathematical biosciences, 2020 - Elsevier
Sensitivity analysis is an important part of a mathematical modeller's toolbox for model
analysis. In this review paper, we describe the most frequently used sensitivity techniques …

Sensitivity analysis approaches applied to systems biology models

Z Zi - IET systems biology, 2011 - IET
With the rising application of systems biology, sensitivity analysis methods have been widely
applied to study the biological systems, including metabolic networks, signalling pathways …

Sobol sensitivity analysis: a tool to guide the development and evaluation of systems pharmacology models

XY Zhang, MN Trame, LJ Lesko… - CPT: pharmacometrics & …, 2015 - Wiley Online Library
A systems pharmacology model typically integrates pharmacokinetic, biochemical network,
and systems biology concepts into a unifying approach. It typically consists of a large …

[图书][B] Analysis of kinetic reaction mechanisms

T Turányi, AS Tomlin - 2014 - Springer
Chemical processes can be described by detailed kinetic reaction mechanisms consisting of
several hundreds or even thousands of reaction steps. Such reaction mechanisms are used …

A computational systems biology software platform for multiscale modeling and simulation: integrating whole-body physiology, disease biology, and molecular …

T Eissing, L Kuepfer, C Becker, M Block… - Frontiers in …, 2011 - frontiersin.org
Today, in silico studies and trial simulations already complement experimental approaches
in pharmaceutical R&D and have become indispensable tools for decision making and …

Computational approaches for modeling and structural design of biological systems: A comprehensive review

E Gayathiri, P Prakash, P Kumaravel… - Progress in Biophysics …, 2023 - Elsevier
The convergence of biology and computational science has ushered in a revolutionary era,
revolutionizing our understanding of biological systems and providing novel solutions to …

To Sobol or not to Sobol? The effects of sampling schemes in systems biology applications

M Renardy, LR Joslyn, JA Millar, DE Kirschner - Mathematical biosciences, 2021 - Elsevier
Computational and mathematical models in biology rely heavily on the parameters that
characterize them. However, robust estimates for their values are typically elusive and thus a …

Quantitative analysis of transient and sustained transforming growth factor‐β signaling dynamics

Z Zi, Z Feng, DA Chapnick, M Dahl, D Deng… - Molecular systems …, 2011 - embopress.org
Mammalian cells can decode the concentration of extracellular transforming growth factor‐β
(TGF‐β) and transduce this cue into appropriate cell fate decisions. How variable TGF‐β …

Computational design approaches and tools for synthetic biology

JT MacDonald, C Barnes, RI Kitney… - Integrative …, 2011 - academic.oup.com
A proliferation of new computational methods and software tools for synthetic biology design
has emerged in recent years but the field has not yet reached the stage where the design …

A Quantitative Study of the Hog1 MAPK Response to Fluctuating Osmotic Stress in Saccharomyces cerevisiae

Z Zi, W Liebermeister, E Klipp - PloS one, 2010 - journals.plos.org
Background Yeast cells live in a highly fluctuating environment with respect to temperature,
nutrients, and especially osmolarity. The Hog1 mitogen-activated protein kinase (MAPK) …