General theory of static response for markov jump processes

T Aslyamov, M Esposito - Physical Review Letters, 2024 - APS
We consider Markov jump processes on a graph described by a rate matrix that depends on
various control parameters. We derive explicit expressions for the static responses of edge …

Nonequilibrium response for markov jump processes: Exact results and tight bounds

T Aslyamov, M Esposito - Physical Review Letters, 2024 - APS
Generalizing response theory of open systems far from equilibrium is a central quest of
nonequilibrium statistical physics. Using stochastic thermodynamics, we develop an …

Physical interactions in non-ideal fluids promote Turing patterns

L Menou, C Luo, D Zwicker - Journal of the Royal …, 2023 - royalsocietypublishing.org
Turing's mechanism is often invoked to explain periodic patterns in nature, although direct
experimental support is scarce. Turing patterns form in reaction–diffusion systems when the …

Stochastic thermodynamics for biological functions

Y Cao, S Liang - Quantitative Biology, 2025 - Wiley Online Library
Living systems operate within physical constraints imposed by nonequilibrium
thermodynamics. This review explores recent advancements in applying these principles to …

Thermodynamically consistent flocking: from discontinuous to continuous transitions

T Agranov, RL Jack, ME Cates, É Fodor - New Journal of Physics, 2024 - iopscience.iop.org
We introduce a family of lattice-gas models of flocking, whose thermodynamically consistent
dynamics admits a proper equilibrium limit at vanishing self-propulsion. These models are …

Characterizing the conditions for indefinite growth in open chemical reaction networks

SG Marehalli Srinivas, F Avanzini, M Esposito - Physical Review E, 2024 - APS
The thermodynamic and dynamical conditions necessary to observe indefinite growth in
homogeneous open chemical reaction networks (CRNs) satisfying mass action kinetics are …

Thermodynamics of growth in open chemical reaction networks

SG Marehalli Srinivas, F Avanzini, M Esposito - Physical Review Letters, 2024 - APS
We identify the thermodynamic conditions necessary to observe indefinite growth in
homogeneous open chemical reaction networks (CRNs) satisfying mass action kinetics. We …

[HTML][HTML] Nonequilibrium thermodynamics of non-ideal reaction–diffusion systems: Implications for active self-organization

F Avanzini, T Aslyamov, É Fodor… - The Journal of Chemical …, 2024 - pubs.aip.org
We develop a framework describing the dynamics and thermodynamics of open non-ideal
reaction–diffusion systems, which embodies Flory–Huggins theories of mixtures and …

Stochastic analysis of chemical reactions in multi-component interacting systems at criticality

R Tiani, UC Täuber - Europhysics Letters, 2023 - iopscience.iop.org
We numerically and analytically investigate the behavior of a non-equilibrium phase
transition in the second Schlögl autocatalytic reaction scheme. Our model incorporates both …

Thermodynamically consistent flocking: From discontinuous to continuous transitions

RL Jack, ME Cates, E Fodor - 2024 - repository.cam.ac.uk
Abstract jats: titleAbstract</jats: title> jats: pWe introduce a family of lattice-gas models of
flocking, whose thermodynamically consistent dynamics admits a proper equilibrium limit at …