Two decades of Martini: Better beads, broader scope

SJ Marrink, L Monticelli, MN Melo… - Wiley …, 2023 - Wiley Online Library
The Martini model, a coarse‐grained force field for molecular dynamics simulations, has
been around for nearly two decades. Originally developed for lipid‐based systems by the …

Computational modeling for the design and development of nano based drug delivery systems

T Ashwini, R Narayan, PA Shenoy, UY Nayak - Journal of Molecular Liquids, 2022 - Elsevier
The nanoparticle delivery system is one of the promising nanotechnology applications for
efficient drug delivery to the targeted site. However, the selection of lead excipient …

[HTML][HTML] Dendrimer-based nanocomposites for the production of RNA delivery systems

CC Lim, LY Chia, PV Kumar - OpenNano, 2023 - Elsevier
A novel approach to treating cancer has been revealed to be effective cancer vaccination. It
has also been demonstrated that nucleic acid therapies such as mRNA and siRNA are very …

Computer Aided Development of Nucleic Acid Applications in Nanotechnologies

M Paloncýová, M Pykal, P Kührová, P Banáš, J Šponer… - Small, 2022 - Wiley Online Library
Utilization of nucleic acids (NAs) in nanotechnologies and nanotechnology‐related
applications is a growing field with broad application potential, ranging from biosensing up …

In silico study of PEI-PEG-squalene-dsDNA polyplex formation: The delicate role of the PEG length in the binding of PEI to DNA

T Vasiliu, BF Craciun, A Neamtu, L Clima… - Biomaterials …, 2021 - pubs.rsc.org
Biocompatible hydrophilic polyethylene glycol (PEG) is widely used in biomedical
applications, such as drug or gene delivery, tissue engineering or as an antifouling …

High Charge Density in Peptide Dendrimers is Required to Destabilize Membranes: Insights into Endosome Evasion

FEP Rodrigues, T Darbre… - Journal of chemical …, 2024 - ACS Publications
Peptide dendrimers are a type of branched, symmetric, and topologically well-defined
molecule that have already been used as delivery systems for nucleic acid transfection …

A Molecular Dynamics Simulation of Complexes of Fullerenes and Lysine-Based Peptide Dendrimers with and without Glycine Spacers

VV Bezrodnyi, SE Mikhtaniuk, OV Shavykin… - International Journal of …, 2024 - mdpi.com
The development of new nanocontainers for hydrophobic drugs is one of the most important
tasks of drug delivery. Dendrimers with hydrophobic interiors and soluble terminal groups …

Core-size and geometry versus toxicity in small amino terminated PAMAM dendrimers

CB Hansen, A Janaszewska, M Dąbrzalska… - RSC …, 2024 - pubs.rsc.org
A series of 6 small PAMAM dendrimers (G0-dendrimers) differing in the size, polarity and
flexibility has been synthesized. The toxicity has been investigated in three different human …

Mathematical and computational models of RNA nanoclusters and their applications in data-driven environments

S Badu, R Melnik, S Singh - Molecular Simulation, 2020 - Taylor & Francis
Ribonucleic acid (RNA) is a fundamental molecule having several favourable structural
properties that can be used for various potential applications in the field of nanotechnology …

Characterization of the Interaction of Polymeric Micelles with siRNA: A Combined Experimental and Molecular Dynamics Study

F Marquet, F Stojceski, G Grasso, V Patrulea, A Danani… - Polymers, 2022 - mdpi.com
The simulation of large molecular systems remains a daunting challenge, which justifies the
exploration of novel methodologies to keep computers as an ideal companion tool for …