Bioimage informatics: a new area of engineering biology

H Peng - Bioinformatics, 2008 - academic.oup.com
In recent years, the deluge of complicated molecular and cellular microscopic images
creates compelling challenges for the image computing community. There has been an …

Tracking in cell and developmental biology

E Meijering, O Dzyubachyk, I Smal… - Seminars in cell & …, 2009 - Elsevier
The past decade has seen an unprecedented data explosion in biology. It has become
evident that in order to take full advantage of the potential wealth of information hidden in the …

Automated segmentation and tracking of mitochondria in live-cell time-lapse images

AEYT Lefebvre, D Ma, K Kessenbrock, DA Lawson… - Nature …, 2021 - nature.com
Mitochondria display complex morphology and movements, which complicates their
segmentation and tracking in time-lapse images. Here, we introduce Mitometer, an algorithm …

[HTML][HTML] Objective comparison of particle tracking methods

N Chenouard, I Smal, F De Chaumont, M Maška… - Nature …, 2014 - nature.com
Particle tracking is of key importance for quantitative analysis of intracellular dynamic
processes from time-lapse microscopy image data. Because manually detecting and …

Multiple hypothesis tracking for cluttered biological image sequences

N Chenouard, I Bloch… - IEEE transactions on …, 2013 - ieeexplore.ieee.org
In this paper, we present a method for simultaneously tracking thousands of targets in
biological image sequences, which is of major importance in modern biology. The …

plusTipTracker: Quantitative image analysis software for the measurement of microtubule dynamics

KT Applegate, S Besson, A Matov, MH Bagonis… - Journal of structural …, 2011 - Elsevier
Here we introduce plusTipTracker, a Matlab-based open source software package that
combines automated tracking, data analysis, and visualization tools for movies of …

Quantitative comparison of spot detection methods in fluorescence microscopy

I Smal, M Loog, W Niessen… - IEEE transactions on …, 2009 - ieeexplore.ieee.org
Quantitative analysis of biological image data generally involves the detection of many
subresolution spots. Especially in live cell imaging, for which fluorescence microscopy is …

[HTML][HTML] Computerized cell tracking: Current methods, tools and challenges

N Emami, Z Sedaei, R Ferdousi - Visual Informatics, 2021 - Elsevier
In developmental biology, knowledge of cell structure and their (morpho) dynamic behavior,
leads to a comprehensive understanding of their conducts and the mechanisms in which …

Image processing and recognition for biological images

S Uchida - Development, growth & differentiation, 2013 - Wiley Online Library
This paper reviews image processing and pattern recognition techniques, which will be
useful to analyze bioimages. Although this paper does not provide their technical details, it …

Taking aim at moving targets in computational cell migration

P Masuzzo, M Van Troys, C Ampe, L Martens - Trends in cell biology, 2016 - cell.com
Cell migration is central to the development and maintenance of multicellular organisms.
Fundamental understanding of cell migration can, for example, direct novel therapeutic …