Cryo-electron tomography and subtomogram averaging

W Wan, JAG Briggs - Methods in enzymology, 2016 - Elsevier
Cryo-electron tomography (cryo-ET) allows 3D volumes to be reconstructed from a set of 2D
projection images of a tilted biological sample. It allows densities to be resolved in 3D that …

Potential for protein surface shape analysis using spherical harmonics and 3D Zernike descriptors

V Venkatraman, L Sael, D Kihara - Cell biochemistry and biophysics, 2009 - Springer
With structure databases expanding at a rapid rate, the task at hand is to provide reliable
clues to their molecular function and to be able to do so on a large scale. This, however …

[图书][B] Three-dimensional electron microscopy of macromolecular assemblies: visualization of biological molecules in their native state

J Frank - 2006 - books.google.com
Cryoelectron microscopy of biological molecules is among the hottest growth areas in
biophysics and structural biology at present, and Frank is arguably the most distinguished …

FFTs on the rotation group

PJ Kostelec, DN Rockmore - Journal of Fourier analysis and applications, 2008 - Springer
We discuss an implementation of an efficient algorithm for the numerical computation of
Fourier transforms of bandlimited functions defined on the rotation group SO (3). The …

[图书][B] Handbook of computational molecular biology

S Aluru - 2005 - taylorfrancis.com
The enormous complexity of biological systems at the molecular level must be answered
with powerful computational methods. Computational biology is a young field, but has seen …

Quaternions in molecular modeling

CFF Karney - Journal of Molecular Graphics and Modelling, 2007 - Elsevier
Quaternions are an important tool to describe the orientation of a molecule. This paper
considers the use of quaternions in matching two conformations of a molecule, in …

HEMNMA-3D: cryo electron tomography method based on normal mode analysis to study continuous conformational variability of macromolecular complexes

M Harastani, M Eltsov, A Leforestier… - Frontiers in molecular …, 2021 - frontiersin.org
Cryogenic electron tomography (cryo-ET) allows structural determination of biomolecules in
their native environment (in situ). Its potential of providing information on the dynamics of …

FRODOCK: a new approach for fast rotational protein–protein docking

JI Garzon, JR Lopéz-Blanco, C Pons, J Kovacs… - …, 2009 - academic.oup.com
Motivation: Prediction of protein–protein complexes from the coordinates of their unbound
components usually starts by generating many potential predictions from a rigid-body 6D …

Classification and 3D averaging with missing wedge correction in biological electron tomography

A Bartesaghi, P Sprechmann, J Liu, G Randall… - Journal of structural …, 2008 - Elsevier
Strategies for the determination of 3D structures of biological macromolecules using electron
crystallography and single-particle electron microscopy utilize powerful tools for the …

3D rotation invariant local binary patterns

J Fehr, H Burkhardt - 2008 19th International conference on …, 2008 - ieeexplore.ieee.org
We present a novel method for the fast computation of rotation invariant¿ local binary
patterns¿(LBP) on 3D volume data. Unlike a previous publication on 3D LBP, this new …