Recent advances in the structural mechanisms of DNA glycosylases

SC Brooks, S Adhikary, EH Rubinson… - Biochimica et Biophysica …, 2013 - Elsevier
DNA glycosylases safeguard the genome by locating and excising a diverse array of
aberrant nucleobases created from oxidation, alkylation, and deamination of DNA. Since the …

A Kinetic Platform to Determine the Fate of Nitric Oxide in Escherichia coli

JL Robinson, MP Brynildsen - PLoS computational biology, 2013 - journals.plos.org
Nitric oxide (NO•) is generated by the innate immune response to neutralize pathogens. NO•
and its autoxidation products have an extensive biochemical reaction network that includes …

Gas-phase studies of purine 3-methyladenine DNA glycosylase II (AlkA) substrates

AZ Michelson, M Chen, K Wang… - Journal of the American …, 2012 - ACS Publications
3-Methyladenine DNA glycosylase II (AlkA) is an enzyme that cleaves a wide range of
damaged bases from DNA. The gas-phase thermochemical properties (tautomerism, acidity …

Impact of DNA sequences on DNA 'opening'by the Rad4/XPC nucleotide excision repair complex

D Paul, H Mu, A Tavakoli, Q Dai, S Chakraborty, C He… - DNA repair, 2021 - Elsevier
Rad4/XPC recognizes diverse DNA lesions to initiate nucleotide excision repair (NER).
However, NER propensities among lesions vary widely and repair-resistant lesions are …

Base excision repair enzymes protect abasic sites in duplex DNA from interstrand cross-links

SJ Admiraal, PJ O'Brien - Biochemistry, 2015 - ACS Publications
Hydrolysis of the N-glycosyl bond between a nucleobase and deoxyribose leaves an abasic
site within duplex DNA. The abasic site can react with exocyclic amines of nucleobases on …

Biochemical characterization and mutational studies of a novel 3-methlyadenine DNA glycosylase II from the hyperthermophilic Thermococcus gammatolerans

D Jiang, L Zhang, K Dong, Y Gong, P Oger - DNA repair, 2021 - Elsevier
The hyperthermophilic and radioresistant euryarchaeon Thermococcus gammatolerans
encodes a putative 3-methlyadenine DNA glycosylase II (Tg-AlkA). Herein, we report …

Aag hypoxanthine-DNA glycosylase is synthesized in the forespore compartment and involved in counteracting the genotoxic and mutagenic effects of hypoxanthine …

VM Ayala-García, LI Valenzuela-García… - Journal of …, 2016 - Am Soc Microbiol
Aag from Bacillus subtilis has been implicated in in vitro removal of hypoxanthine and
alkylated bases from DNA. The regulation of expression of aag in B. subtilis and the …

Kinetic Mechanism for the Flipping and Excision of 1,N6-Ethenoadenine by AlkA

EL Taylor, PJ O'Brien - Biochemistry, 2015 - ACS Publications
Escherichia coli 3-methyladenine DNA glycosylase II (AlkA), an adaptive response
glycosylase with a broad substrate range, initiates base excision repair by flipping a lesion …

Recognition of 1, N2-ethenoguanine by alkyladenine DNA glycosylase is restricted by a conserved active-site residue

AZ Thelen, PJ O'Brien - Journal of Biological Chemistry, 2020 - ASBMB
The adenine, cytosine, and guanine bases of DNA are susceptible to alkylation by the
aldehyde products of lipid peroxidation and by the metabolic byproducts of vinyl chloride …

DNA-N-Glycosylases Process Novel O-Glycosidic Sites in DNA

SJ Admiraal, PJ O'Brien - Biochemistry, 2013 - ACS Publications
After the hydrolysis of the N-glycosyl bond between a damaged base and C1′ of a
deoxyribosyl moiety of DNA, human alkyladenine DNA glycosylase (AAG) and Escherichia …