Scaling‐up biodiversity‐ecosystem functioning research

A Gonzalez, RM Germain, DS Srivastava… - Ecology …, 2020 - Wiley Online Library
A rich body of knowledge links biodiversity to ecosystem functioning (BEF), but it is primarily
focused on small scales. We review the current theory and identify six expectations for scale …

Psychology's replication crisis and clinical psychological science

JL Tackett, CM Brandes, KM King… - Annual review of …, 2019 - annualreviews.org
Despite psychological scientists' increasing interest in replicability, open science, research
transparency, and the improvement of methods and practices, the clinical psychology …

Inference and analysis of cell-cell communication using CellChat

S Jin, CF Guerrero-Juarez, L Zhang, I Chang… - Nature …, 2021 - nature.com
Understanding global communications among cells requires accurate representation of cell-
cell signaling links and effective systems-level analyses of those links. We construct a …

Making images real again: A comprehensive survey on deep image composition

L Niu, W Cong, L Liu, Y Hong, B Zhang, J Liang… - arXiv preprint arXiv …, 2021 - arxiv.org
As a common image editing operation, image composition aims to combine the foreground
from one image and another background image, resulting in a composite image. However …

The airway microbiome mediates the interaction between environmental exposure and respiratory health in humans

L Lin, X Yi, H Liu, R Meng, S Li, X Liu, J Yang, Y Xu… - Nature Medicine, 2023 - nature.com
Exposure to environmental pollution influences respiratory health. The role of the airway
microbial ecosystem underlying the interaction of exposure and respiratory health remains …

Complex networks from classical to quantum

J Biamonte, M Faccin, M De Domenico - Communications Physics, 2019 - nature.com
Recent progress in applying complex network theory to problems in quantum information
has resulted in a beneficial cross-over. Complex network methods have successfully been …

Context-aware deconvolution of cell–cell communication with Tensor-cell2cell

E Armingol, HM Baghdassarian, C Martino… - Nature …, 2022 - nature.com
Cell interactions determine phenotypes, and intercellular communication is shaped by
cellular contexts such as disease state, organismal life stage, and tissue microenvironment …

Measure the structure similarity of nodes in complex networks based on relative entropy

Q Zhang, M Li, Y Deng - Physica A: Statistical Mechanics and its …, 2018 - Elsevier
Similarity of nodes is a basic structure quantification in complex networks. Lots of methods in
research on complex networks are based on nodes' similarity such as node's classification …

Retgk: Graph kernels based on return probabilities of random walks

Z Zhang, M Wang, Y Xiang… - Advances in Neural …, 2018 - proceedings.neurips.cc
Graph-structured data arise in wide applications, such as computer vision, bioinformatics,
and social networks. Quantifying similarities among graphs is a fundamental problem. In this …

A simple yet effective baseline for non-attributed graph classification

C Cai, Y Wang - arXiv preprint arXiv:1811.03508, 2018 - arxiv.org
Graphs are complex objects that do not lend themselves easily to typical learning tasks.
Recently, a range of approaches based on graph kernels or graph neural networks have …