Transformer architecture and attention mechanisms in genome data analysis: a comprehensive review

SR Choi, M Lee - Biology, 2023 - mdpi.com
Simple Summary The rapidly advancing field of deep learning, specifically transformer-
based architectures and attention mechanisms, has found substantial applicability in …

Graph neural networks in cancer and oncology research: Emerging and future trends

G Gogoshin, AS Rodin - Cancers, 2023 - mdpi.com
Simple Summary Graph Neural Networks are emerging as a powerful tool for structured data
analysis, and predictive modeling in massive multimodal datasets. In this review, we survey …

ECD-CDGI: An efficient energy-constrained diffusion model for cancer driver gene identification

T Wang, L Zhuo, Y Chen, X Fu, X Zeng… - PLOS Computational …, 2024 - journals.plos.org
The identification of cancer driver genes (CDGs) poses challenges due to the intricate
interdependencies among genes and the influence of measurement errors and noise. We …

Prediction of Myocardial Infarction Using a Combined Generative Adversarial Network Model and Feature-Enhanced Loss Function

S Yu, S Han, M Shi, M Harada, J Ge, X Li, X Cai… - Metabolites, 2024 - mdpi.com
Accurate risk prediction for myocardial infarction (MI) is crucial for preventive strategies,
given its significant impact on global mortality and morbidity. Here, we propose a novel deep …

LASSO–MOGAT: a multi-omics graph attention framework for cancer classification

F Alharbi, A Vakanski, MK Elbashir… - Academia Biology, 2024 - academia.edu
The application of machine learning (ML) methods to analyze changes in gene expression
patterns has recently emerged as a powerful approach in cancer research, enhancing our …

Enhancing Molecular Network‐Based Cancer Driver Gene Prediction Using Machine Learning Approaches: Current Challenges and Opportunities

H Zhang, C Lin, Y Chen, X Shen… - Journal of Cellular …, 2025 - Wiley Online Library
Cancer is a complex disease driven by mutations in the genes that play critical roles in
cellular processes. The identification of cancer driver genes is crucial for understanding …

Hierarchical Detection of Gastrodia elata Based on Improved YOLOX

X Duan, Y Lin, L Li, F Zhang, S Li, Y Liao - Agronomy, 2023 - mdpi.com
Identifying the grade of Gastrodia elata in the market has low efficiency and accuracy. To
address this issue, an I-YOLOX object detection algorithm based on deep learning and …

DMGNN: cancer driver gene identification based on mix-moment graph neural network

B Chen, Z Li, H Li, J Li, R Kang… - … on Bioinformatics and …, 2024 - ieeexplore.ieee.org
Cancer development is closely linked to the accumulation of mutations in driver genes.
Therefore, identification of driver genes is crucial for understanding the molecular basis of …

[PDF][PDF] Prediction of Myocardial Infarction Using a Combined Generative Adversarial Network Model and Feature-Enhanced Loss Function. Metabolites 2024, 14, 258

S Yu, S Han, M Shi, M Harada, J Ge, X Li, X Cai… - 2024 - pdfs.semanticscholar.org
Accurate risk prediction for myocardial infarction (MI) is crucial for preventive strategies,
given its significant impact on global mortality and morbidity. Here, we propose a novel deep …

[引用][C] Transformer Architectures and Attention Mechanisms in Genome Data Analysis: A Comprehensive Review. Biology 2023, 12, 1033

SR Choi, M Lee - 2023 - europepmc.org
The emergence and rapid development of deep learning, specifically transformer-based
architectures and attention mechanisms, have had transformative implications across …