Integration site selection by retroviruses and transposable elements in eukaryotes

T Sultana, A Zamborlini, G Cristofari… - Nature Reviews …, 2017 - nature.com
Transposable elements and retroviruses are found in most genomes, can be pathogenic
and are widely used as gene-delivery and functional genomics tools. Exploring whether …

Cellular and molecular mechanisms of HIV-1 integration targeting

AN Engelman, PK Singh - Cellular and Molecular Life Sciences, 2018 - Springer
Integration is central to HIV-1 replication and helps mold the reservoir of cells that persists in
AIDS patients. HIV-1 interacts with specific cellular factors to target integration to interior …

[HTML][HTML] Understanding retroviral life cycle and its genomic RNA packaging

A Chameettachal, F Mustafa, TA Rizvi - Journal of molecular biology, 2023 - Elsevier
Members of the family Retroviridae are important animal and human pathogens. Being
obligate parasites, their replication involves a series of steps during which the virus hijacks …

Physical principles of retroviral integration in the human genome

D Michieletto, M Lusic, D Marenduzzo… - Nature …, 2019 - nature.com
Certain retroviruses, including HIV, insert their DNA in a non-random fraction of the host
genome via poorly understood selection mechanisms. Here, we develop a biophysical …

The two-component system ZraPSR is a novel ESR that contributes to intrinsic antibiotic tolerance in Escherichia coli

K Rome, C Borde, R Taher, J Cayron… - Journal of molecular …, 2018 - Elsevier
During their lifecycle, bacteria are exposed to continuous changes in their environment,
some of which are stressful and can be harmful. The cell envelope is the first line of defense …

DNA topoisomerase 1 represses HIV-1 promoter activity through its interaction with a guanine quadruplex present in the LTR sequence

MJ Lista, AC Jousset, M Cheng, V Saint-André… - Retrovirology, 2023 - Springer
Background Once integrated in the genome of infected cells, HIV-1 provirus is transcribed by
the cellular transcription machinery. This process is regulated by both viral and cellular …

Modulation of chromatin structure by the FACT histone chaperone complex regulates HIV-1 integration

J Matysiak, P Lesbats, E Mauro, D Lapaillerie… - Retrovirology, 2017 - Springer
Background Insertion of retroviral genome DNA occurs in the chromatin of the host cell. This
step is modulated by chromatin structure as nucleosomes compaction was shown to prevent …

HIV-1 preintegration complex preferentially integrates the viral DNA into nucleosomes containing trimethylated histone 3-lysine 36 modification and flanking linker …

N Sapp, N Burge, K Cox, P Prakash… - Journal of …, 2022 - Am Soc Microbiol
ABSTRACT HIV-1 DNA is preferentially integrated into chromosomal hot spots by the
preintegration complex (PIC). To understand the mechanism, we measured the DNA …

[HTML][HTML] The benefits of integration

A Ciuffi - Clinical Microbiology and Infection, 2016 - Elsevier
Retroviruses, including the human immunodeficiency virus (HIV), are notorious for two
essential steps of their viral replication: reverse transcription and integration. This latter …

Sites of retroviral DNA integration: From basic research to clinical applications

E Serrao, AN Engelman - Critical reviews in biochemistry and …, 2016 - Taylor & Francis
One of the most crucial steps in the life cycle of a retrovirus is the integration of the viral DNA
(vDNA) copy of the RNA genome into the genome of an infected host cell. Integration …