Predictive biology is the next great chapter in synthetic and systems biology, particularly for microorganisms. Tasks that once seemed infeasible are increasingly being realized such as …
Bacteria exist as communities in diverse multispecies environments. Quorum sensing, a process for cell–cell communication, allows individual bacteria to glean information about …
Microbial communities inhabit spatial architectures that divide a global environment into isolated or semi-isolated local environments, which leads to the partitioning of a microbial …
From biosynthesis to bioremediation, microbes have been engineered to address a variety of biotechnological applications. A promising direction in these endeavors is harnessing the …
Quorum sensing (QS) is a molecular signaling modality that mediates molecular-based cell– cell communication. Prevalent in nature, QS networks provide bacteria with a method to …
Increasingly intimate associations between human society and the natural environment are driving the emergence of novel pathogens, with devastating consequences for humans and …
Y Baig, HR Ma, H Xu, L You - Nature Communications, 2023 - nature.com
The ability to effectively represent microbiome dynamics is a crucial challenge in their quantitative analysis and engineering. By using autoencoder neural networks, we show that …
Mutualisms are ubiquitous in nature, provide important ecosystem services, and involve many species of interest for conservation. Theoretical progress on the population dynamics …
KE Duncker, ZA Holmes, L You - Microbial Cell Factories, 2021 - Springer
Many applications of microbial synthetic biology, such as metabolic engineering and biocomputing, are increasing in design complexity. Implementing complex tasks in single …