DNA methylation pathways and their crosstalk with histone methylation

J Du, LM Johnson, SE Jacobsen… - Nature reviews Molecular …, 2015 - nature.com
Methylation of DNA and of histone 3 at Lys 9 (H3K9) are highly correlated with gene
silencing in eukaryotes from fungi to humans. Both of these epigenetic marks need to be …

Somatic embryogenesis—stress-induced remodeling of plant cell fate

A Fehér - Biochimica et Biophysica Acta (BBA)-Gene Regulatory …, 2015 - Elsevier
Plants as sessile organisms have remarkable developmental plasticity ensuring heir
continuous adaptation to the environment. An extreme example is somatic embryogenesis …

Non-CG methylation patterns shape the epigenetic landscape in Arabidopsis

H Stroud, T Do, J Du, X Zhong, S Feng… - Nature structural & …, 2014 - nature.com
DNA methylation occurs in CG and non-CG sequence contexts. Non-CG methylation is
abundant in plants and is mediated by CHROMOMETHYLASE (CMT) and DOMAINS …

DDM1-mediated R-loop resolution and H2A. Z exclusion facilitates heterochromatin formation in Arabidopsis

J Zhou, X Lei, S Shafiq, W Zhang, Q Li, K Li, J Zhu… - Science …, 2023 - science.org
Programmed constitutive heterochromatin silencing is essential for eukaryotic genome
regulation, yet the initial step of this process is ambiguous. A large proportion of R-loops …

[HTML][HTML] Comprehensive analysis of silencing mutants reveals complex regulation of the Arabidopsis methylome

H Stroud, MVC Greenberg, S Feng, YV Bernatavichute… - Cell, 2013 - cell.com
Cytosine methylation is involved in various biological processes such as silencing of
transposable elements (TEs) and imprinting. Multiple pathways regulate DNA methylation in …

Plant immunity: from signaling to epigenetic control of defense

JS Ramirez-Prado, AA Abulfaraj, N Rayapuram… - Trends in plant …, 2018 - cell.com
Pathogen recognition by plants results in the activation of signaling pathways that induce
defense reactions. There is growing evidence indicating that epigenetic mechanisms directly …

Epigenetics in human disease and prospects for epigenetic therapy

G Egger, G Liang, A Aparicio, PA Jones - Nature, 2004 - nature.com
Epigenetic mechanisms, which involve DNA and histone modifications, result in the
heritable silencing of genes without a change in their coding sequence. The study of human …

Piwi induces piRNA-guided transcriptional silencing and establishment of a repressive chromatin state

A Le Thomas, AK Rogers, A Webster… - Genes & …, 2013 - genesdev.cshlp.org
In the metazoan germline, piwi proteins and associated piwi-interacting RNAs (piRNAs)
provide a defense system against the expression of transposable elements. In the …

Histone methylation in higher plants

C Liu, F Lu, X Cui, X Cao - Annual review of plant biology, 2010 - annualreviews.org
Histone methylation plays a fundamental role in regulating diverse developmental
processes and is also involved in silencing repetitive sequences in order to maintain …

Transposition favors the generation of large effect mutations that may facilitate rapid adaption

L Quadrana, M Etcheverry, A Gilly, E Caillieux… - Nature …, 2019 - nature.com
Transposable elements (TEs) are mobile parasitic sequences that have been repeatedly
coopted during evolution to generate new functions and rewire gene regulatory networks …