New insight into phytochromes: connecting structure to function

J Hughes, A Winkler - Annual review of plant biology, 2024 - annualreviews.org
Red and far-red light–sensing phytochromes are widespread in nature, occurring in plants,
algae, fungi, and prokaryotes. Despite at least a billion years of evolution, their photosensory …

The red edge: bilin-binding photoreceptors as optogenetic tools and fluorescence reporters

K Tang, HM Beyer, MD Zurbriggen… - Chemical …, 2021 - ACS Publications
This review adds the bilin-binding phytochromes to the Chemical Reviews thematic issue
“Optogenetics and Photopharmacology”. The work is structured into two parts. We first …

Protein control of photochemistry and transient intermediates in phytochromes

G Salvadori, V Macaluso, G Pellicci, L Cupellini… - Nature …, 2022 - nature.com
Phytochromes are ubiquitous photoreceptors responsible for sensing light in plants, fungi
and bacteria. Their photoactivation is initiated by the photoisomerization of the embedded …

[HTML][HTML] Optogenetic approaches to study the mammalian brain

J Deubner, P Coulon, I Diester - Current opinion in structural biology, 2019 - Elsevier
Highlights•State-of the art approaches to implement optogenetics in mammals.•Application
principles of optogenetic strategies in freely moving animals.•All-optical approaches …

Vibrational couplings between protein and cofactor in bacterial phytochrome Agp1 revealed by 2D-IR spectroscopy

D Buhrke, N Michael, P Hamm - Proceedings of the …, 2022 - National Acad Sciences
Phytochromes are ubiquitous photoreceptor proteins that undergo a significant refolding of
secondary structure in response to initial photoisomerization of the chromophoric group …

Tips and turns of bacteriophytochrome photoactivation

H Takala, P Edlund, JA Ihalainen… - Photochemical & …, 2020 - pubs.rsc.org
Phytochromes are ubiquitous photosensor proteins, which control the growth, reproduction
and movement in plants, fungi and bacteria. Phytochromes switch between two …

Signal transduction in photoreceptor histidine kinases

A Möglich - Protein science, 2019 - Wiley Online Library
Two‐component systems (TCS) constitute the predominant means by which prokaryotes
read out and adapt to their environment. Canonical TCSs comprise a sensor histidine kinase …

Photosensing and quorum sensing are integrated to control Pseudomonas aeruginosa collective behaviors

S Mukherjee, M Jemielita, V Stergioula, M Tikhonov… - PLoS …, 2019 - journals.plos.org
Bacteria convert changes in sensory inputs into alterations in gene expression, behavior,
and lifestyles. A common lifestyle choice that bacteria make is whether to exhibit individual …

Signaling by a bacterial phytochrome histidine kinase involves a conformational cascade reorganizing the dimeric photoreceptor

ES Burgie, K Basore, MJ Rau, B Summers… - Nature …, 2024 - nature.com
Phytochromes (Phys) are a divergent cohort of bili-proteins that detect light through
reversible interconversion between dark-adapted Pr and photoactivated Pfr states. While our …

A genetically encoded far‐red fluorescent calcium ion biosensor derived from a biliverdin‐binding protein

R Hashizume, H Fujii, S Mehta, K Ota, Y Qian… - Protein …, 2022 - Wiley Online Library
Far‐red and near‐infrared (NIR) genetically encoded calcium ion (Ca2+) indicators (GECIs)
are powerful tools for in vivo and multiplexed imaging of neural activity and cell signaling …