Advances and challenges in metatranscriptomic analysis
Sequencing-based analyses of microbiomes have traditionally focused on addressing the
question of community membership and profiling taxonomic abundance through amplicon …
question of community membership and profiling taxonomic abundance through amplicon …
[HTML][HTML] A review of computational tools for generating metagenome-assembled genomes from metagenomic sequencing data
Metagenomic sequencing provides a culture-independent avenue to investigate the
complex microbial communities by constructing metagenome-assembled genomes (MAGs) …
complex microbial communities by constructing metagenome-assembled genomes (MAGs) …
Multi-omics data integration considerations and study design for biological systems and disease
S Graw, K Chappell, CL Washam, A Gies, J Bird… - Molecular omics, 2021 - pubs.rsc.org
With the advancement of next-generation sequencing and mass spectrometry, there is a
growing need for the ability to merge biological features in order to study a system as a …
growing need for the ability to merge biological features in order to study a system as a …
Dissolved storage glycans shaped the community composition of abundant bacterioplankton clades during a North Sea spring phytoplankton bloom
Background Blooms of marine microalgae play a pivotal role in global carbon cycling. Such
blooms entail successive blooms of specialized clades of planktonic bacteria that …
blooms entail successive blooms of specialized clades of planktonic bacteria that …
Metagenomic data assembly–the way of decoding unknown microorganisms
AL Lapidus, AI Korobeynikov - Frontiers in Microbiology, 2021 - frontiersin.org
Metagenomics is a segment of conventional microbial genomics dedicated to the
sequencing and analysis of combined genomic DNA of entire environmental samples. The …
sequencing and analysis of combined genomic DNA of entire environmental samples. The …
Multi-omics reveal microbial determinants impacting the treatment outcome of antidepressants in major depressive disorder
Background There is a growing body of evidence suggesting that disturbance of the gut-
brain axis may be one of the potential causes of major depressive disorder (MDD). However …
brain axis may be one of the potential causes of major depressive disorder (MDD). However …
Tapping the role of microbial biosurfactants in pesticide remediation: an eco-friendly approach for environmental sustainability
Pesticides are used indiscriminately all over the world to protect crops from pests and
pathogens. If they are used in excess, they contaminate the soil and water bodies and …
pathogens. If they are used in excess, they contaminate the soil and water bodies and …
Metabolic framework of spontaneous and synthetic sourdough metacommunities to reveal microbial players responsible for resilience and performance
Background In nature, microbial communities undergo changes in composition that threaten
their resiliency. Here, we interrogated sourdough, a natural cereal-fermenting …
their resiliency. Here, we interrogated sourdough, a natural cereal-fermenting …
Particle-attached bacteria act as gatekeepers in the decomposition of complex phytoplankton polysaccharides
FQ Wang, D Bartosik, C Sidhu, R Siebers, DC Lu… - Microbiome, 2024 - Springer
Background Marine microalgae (phytoplankton) mediate almost half of the worldwide
photosynthetic carbon dioxide fixation and therefore play a pivotal role in global carbon …
photosynthetic carbon dioxide fixation and therefore play a pivotal role in global carbon …
metaGEM: reconstruction of genome scale metabolic models directly from metagenomes
Metagenomic analyses of microbial communities have revealed a large degree of
interspecies and intraspecies genetic diversity through the reconstruction of metagenome …
interspecies and intraspecies genetic diversity through the reconstruction of metagenome …