Origins of DNA replication in eukaryotes

Y Hu, B Stillman - Molecular cell, 2023 - cell.com
Errors occurring during DNA replication can result in inaccurate replication, incomplete
replication, or re-replication, resulting in genome instability that can lead to diseases such as …

Control of DNA replication timing in the 3D genome

C Marchal, J Sima, DM Gilbert - Nature Reviews Molecular Cell Biology, 2019 - nature.com
The 3D organization of mammalian chromatin was described more than 30 years ago by
visualizing sites of DNA synthesis at different times during the S phase of the cell cycle …

Enhancer regulation of transcriptional bursting parameters revealed by forced chromatin looping

CR Bartman, SC Hsu, CCS Hsiung, A Raj, GA Blobel - Molecular cell, 2016 - cell.com
Mammalian genes transcribe RNA not continuously, but in bursts. Transcriptional output can
be modulated by altering burst fraction or burst size, but how regulatory elements control …

Charting histone modifications and the functional organization of mammalian genomes

VW Zhou, A Goren, BE Bernstein - Nature Reviews Genetics, 2011 - nature.com
A succession of technological advances over the past decade have enabled researchers to
chart maps of histone modifications and related chromatin structures with increasing …

DNA replication timing

N Rhind, DM Gilbert - Cold Spring Harbor perspectives …, 2013 - cshperspectives.cshlp.org
Patterns of replication within eukaryotic genomes correlate with gene expression, chromatin
structure, and genome evolution. Recent advances in genome-scale mapping of replication …

[HTML][HTML] Identifying cis elements for spatiotemporal control of mammalian DNA replication

J Sima, A Chakraborty, V Dileep, M Michalski, KN Klein… - Cell, 2019 - cell.com
The temporal order of DNA replication (replication timing [RT]) is highly coupled with
genome architecture, but cis-elements regulating either remain elusive. We created a series …

Metaboloepigenetics: interrelationships between energy metabolism and epigenetic control of gene expression

DR Donohoe, SJ Bultman - Journal of cellular physiology, 2012 - Wiley Online Library
Diet and energy metabolism affect gene expression, which influences human health and
disease. Here, we discuss the role of epigenetics as a mechanistic link between energy …

Rif1 regulates the replication timing domains on the human genome

S Yamazaki, A Ishii, Y Kanoh, M Oda, Y Nishito… - The EMBO …, 2012 - embopress.org
DNA replication is spatially and temporally regulated during S‐phase. DNA replication
timing is established in early‐G1‐phase at a point referred to as timing decision point …

Mouse Rif1 is a key regulator of the replication‐timing programme in mammalian cells

D Cornacchia, V Dileep, JP Quivy, R Foti, F Tili… - The EMBO …, 2012 - embopress.org
The eukaryotic genome is replicated according to a specific spatio‐temporal programme.
However, little is known about both its molecular control and biological significance. Here …

Maintenance of epigenetic information

G Almouzni, H Cedar - Cold Spring Harbor Perspectives …, 2016 - cshperspectives.cshlp.org
The genome is subject to a diverse array of epigenetic modifications from DNA methylation
to histone posttranslational changes. Many of these marks are somatically stable through …