Applications of omics technology for livestock selection and improvement

D Chakraborty, N Sharma, S Kour, SS Sodhi… - Frontiers in …, 2022 - frontiersin.org
Conventional animal selection and breeding methods were based on the phenotypic
performance of the animals. These methods have limitations, particularly for sex-limited traits …

The flight of chicken genomics and allied omics-a mini review

N Sukhija, KK Kanaka, RC Goli, P Kapoor… - Ecological Genetics and …, 2023 - Elsevier
Humans mostly obtain animal-based proteins through chicken meat and eggs since there
are no societal taboos. The modern chicken is most effective for producing affordable and …

Sequencing depth and genotype quality: accuracy and breeding operation considerations for genomic selection applications in autopolyploid crops

DC Gemenet, H Lindqvist-Kreuze, B De Boeck… - Theoretical and Applied …, 2020 - Springer
Key message Polypoid crop breeders can balance resources between density and
sequencing depth, dosage information and fewer highly informative SNPs recommended …

Low-density AgriSeq targeted genotyping-by-sequencing markers are efficient for pedigree quality control in Pinus taeda L. breeding

YM Lin, MN Shalizi, TD Walker, E Lauer… - Tree Genetics & …, 2023 - Springer
Genotyping platforms for breeding programs should be repeatable, reliable, high-
throughput, and cost-effective. In this study, we compared the efficiency of an Affymetrix …

Dissection of the impact of prioritized QTL-linked and -unlinked SNP markers on the accuracy of genomic selection1

AS Ling, EH Hay, SE Aggrey, R Rekaya - BMC Genomic Data, 2021 - Springer
Background Use of genomic information has resulted in an undeniable improvement in
prediction accuracies and an increase in genetic gain in animal and plant genetic selection …

Marker density and statistical model designs to increase accuracy of genomic selection for wool traits in Angora rabbits

C Ning, K Xie, J Huang, Y Di, Y Wang, A Yang… - Frontiers in …, 2022 - frontiersin.org
The Angora rabbit, a well-known breed for fiber production, has been undergoing traditional
breeding programs relying mainly on phenotypes. Genomic selection (GS) uses genomic …

Genetic diversity, viability and conservation value of the global captive population of the Moroccan Royal lions

K Lehocká, SA Black, A Harland, O Kadlečík… - Plos one, 2021 - journals.plos.org
This study evaluates the diversity of the so-called 'Moroccan Royal lions' using genealogical
information. Lions are no longer extant in North Africa, but the previous wild population was …

Genomic prediction for meat and carcass traits in Nellore cattle using a Markov blanket algorithm

FB Lopes, F Baldi, LC Brunes… - Journal of Animal …, 2023 - Wiley Online Library
This study was carried out to evaluate the advantage of preselecting SNP markers using
Markov blanket algorithm regarding the accuracy of genomic prediction for carcass and …

[HTML][HTML] Genome-wide association study and predictive ability for growth traits in Nellore cattle

FE Carvalho, R Espigolan, MP Berton, JBS Neto… - Livestock Science, 2020 - Elsevier
This study aimed to identify genomic regions influencing growth traits in Nellore cattle and
evaluate the predictive ability of each trait based on results obtained from single-step …

Efficiency of imputing missing genotypes by INDUSCHIP v2 in HF Crossbred cattle

S Saha, N Nayee, HA Shah, S Gajjar… - Indian Journal of …, 2021 - epubs.icar.org.in
INDUSCHIP-an Illumina platform based custom made genotyping chip was designed with
45K polymorphic markers for Indian cattle breeds and 8K base SNPs of Illumina Bovine LD …