Hydrogen bonds: simple after all?

D Herschlag, MM Pinney - Biochemistry, 2018 - ACS Publications
Hydrogen bonds play integral roles in biological structure, function, and conformational
dynamics and are fundamental to life as it has evolved on Earth. However, our …

Protein dynamics and enzymatic catalysis

SD Schwartz - The Journal of Physical Chemistry B, 2023 - ACS Publications
This Perspective presents a review of our work and that of others in the highly controversial
topic of the coupling of protein dynamics to reaction in enzymes. We have been involved in …

Temporal and spatial resolution of distal protein motions that activate hydrogen tunneling in soybean lipoxygenase

JPT Zaragoza, AR Offenbacher, S Hu… - Proceedings of the …, 2023 - National Acad Sciences
The enzyme soybean lipoxygenase (SLO) provides a prototype for deep tunneling
mechanisms in hydrogen transfer catalysis. This work combines room temperature X-ray …

Understanding biological hydrogen transfer through the lens of temperature dependent kinetic isotope effects

JP Klinman, AR Offenbacher - Accounts of chemical research, 2018 - ACS Publications
Hydrogen atom transfer (HAT) is a salient feature of many enzymatic C–H cleavage
mechanisms. In systems where kinetic isolation of HAT is achieved, selective labeling of …

The Intrinsic Barrier Width and Its Role in Chemical Reactivity

G Qiu, PR Schreiner - ACS Central Science, 2023 - ACS Publications
Chemical reactions are in virtually all cases understood and explained on the basis of
depicting the molecular potential energy landscape, ie, the change in atomic positions vs the …

Unlocked potential of dynamic elements in protein structures: channels and loops

N Kreß, JM Halder, LR Rapp, B Hauer - Current opinion in chemical biology, 2018 - Elsevier
Highlights•Loops and channels are both promising dynamic engineering targets for altered
enzymatic properties.•The relevance of loop dynamics in engineering studies highlights to …

A biophysical perspective on enzyme catalysis

PK Agarwal - Biochemistry, 2018 - ACS Publications
Even after a century of investigation, our understanding of how enzymes work remains far
from complete. In particular, several factors that enable enzymes to achieve high catalytic …

Assessment of enzyme active site positioning and tests of catalytic mechanisms through X-ray–derived conformational ensembles

F Yabukarski, JT Biel, MM Pinney… - Proceedings of the …, 2020 - National Acad Sciences
How enzymes achieve their enormous rate enhancements remains a central question in
biology, and our understanding to date has impacted drug development, influenced enzyme …

Large isotope effects in organometallic chemistry

PT Truong, SG Miller… - … A European Journal, 2021 - Wiley Online Library
The kinetic isotope effect (KIE) is key to understanding reaction mechanisms in many areas
of chemistry and chemical biology, including organometallic chemistry. This ratio of rate …

A Reactive Manganese (IV)–Hydroxide Complex: A Missing Intermediate in Hydrogen Atom Transfer by High-Valent Metal-Oxo Porphyrinoid Compounds

JPT Zaragoza, MA Siegler… - Journal of the American …, 2018 - ACS Publications
High-valent metal-hydroxide species are invoked as critical intermediates in both catalytic,
metal-mediated O2 activation (eg, by Fe porphyrin in Cytochrome P450) and O2 production …