Phase-separating RNA-binding proteins form heterogeneous distributions of clusters in subsaturated solutions

M Kar, F Dar, TJ Welsh, LT Vogel… - Proceedings of the …, 2022 - National Acad Sciences
Macromolecular phase separation is thought to be one of the processes that drives the
formation of membraneless biomolecular condensates in cells. The dynamics of phase …

Ligand effects on phase separation of multivalent macromolecules

KM Ruff, F Dar, RV Pappu - Proceedings of the National …, 2021 - National Acad Sciences
Biomolecular condensates enable spatial and temporal control over cellular processes by
concentrating biomolecules into nonstoichiometric assemblies. Many condensates form via …

Chromatin accessibility in the Drosophila embryo is determined by transcription factor pioneering and enhancer activation

KJ Brennan, M Weilert, S Krueger, A Pampari, H Liu… - Developmental cell, 2023 - cell.com
Chromatin accessibility is integral to the process by which transcription factors (TFs) read out
cis-regulatory DNA sequences, but it is difficult to differentiate between TFs that drive …

RNA polymerase II clusters form in line with surface condensation on regulatory chromatin

A Pancholi, T Klingberg, W Zhang, R Prizak… - Molecular systems …, 2021 - embopress.org
It is essential for cells to control which genes are transcribed into RNA. In eukaryotes, two
major control points are recruitment of RNA polymerase II (Pol II) into a paused state, and …

Co-condensation of proteins with single-and double-stranded DNA

R Renger, JA Morin, R Lemaitre… - Proceedings of the …, 2022 - National Acad Sciences
Biomolecular condensates provide distinct compartments that can localize and organize
biochemistry inside cells. Recent evidence suggests that condensate formation is prevalent …

FUS oncofusion protein condensates recruit mSWI/SNF chromatin remodeler via heterotypic interactions between prion‐like domains

RB Davis, T Kaur, MM Moosa, PR Banerjee - Protein Science, 2021 - Wiley Online Library
Fusion transcription factors generated by genomic translocations are common drivers of
several types of cancers including sarcomas and leukemias. Oncofusions of the FET (FUS …

HP1-driven phase separation recapitulates the thermodynamics and kinetics of heterochromatin condensate formation

MMC Tortora, LD Brennan… - Proceedings of the …, 2023 - National Acad Sciences
The spatial segregation of pericentromeric heterochromatin (PCH) into distinct, membrane-
less nuclear compartments involves the binding of Heterochromatin Protein 1 (HP1) to …

Chromatin sequesters pioneer transcription factor Sox2 from exerting force on DNA

T Nguyen, S Li, JTH Chang, JW Watters, H Ng… - Nature …, 2022 - nature.com
Biomolecular condensation constitutes an emerging mechanism for transcriptional
regulation. Recent studies suggest that the co-condensation between transcription factors …

Thermodynamics of wetting, prewetting and surface phase transitions with surface binding

X Zhao, G Bartolucci, A Honigmann… - New Journal of …, 2021 - iopscience.iop.org
In living cells, protein-rich condensates can wet the cell membrane and surfaces of
membrane-bound organelles. Interestingly, many phase-separating proteins also bind to …

Surface densities prewet a near critical membrane

MN Rouches, SL Veatch, BB Machta - Biophysical Journal, 2022 - cell.com
Recent work has highlighted roles for thermodynamic phases in cellular processes. Proteins
and nucleic acids can phase separate into three-dimensional liquid droplets in the …